PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64781.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 375aa MW: 40854.6 Da PI: 7.2773

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64781.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.8e-11	176	234	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ l+ + l+se+ MLOC_64781.6 176 KRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATTLSAQLSLLQRDTSGLTSEN 234 9************************************************9999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-16	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	174	237	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-11	176	231	No hit	No description
SuperFamily	SSF57959	1.9E-11	176	230	No hit	No description
Pfam	PF00170	4.7E-10	176	234	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.21E-24	177	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MNKDRSRISA DGGGDGLPPQ SSRRSATPPP EYDISRMPDF PTRNPGHRRA HSEILSLPDD 60 LDLCAPGGGD GPSLSDENDE ELFSMFLDVD KLNSSCGPSS DQAESSSAAA AGGGEAARAG 120 HVMRPKHQHS QSMDESMSIK AEDLVGAPGM DGMSTVEAKK AVSAAKLAEL ALVDPKRAKR 180 IWANRQSAAR SKERKMRYIG ELERKVQTLQ TEATTLSAQL SLLQRDTSGL TSENGELKLR 240 LQNMEQQVHL QDALNDTLKT EVQRLKVATG QMGNGGGMLM NYGGMSQAPH QFGGNQQMFH 300 NNQSMQSLLA THQLQQLQLH QQPQQQQQPM RPQHHHHQQQ PLHPLQAQQF QQAARDLKMK 360 GPMWGDGKSS GGGGI

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MNKDRSRISA DGGGDGLPPQ SSRRSATPPP EYDISRMPDF PTRNPGHRRA HSEILSLPDD  60
LDLCAPGGGD GPSLSDENDE ELFSMFLDVD KLNSSCGPSS DQAESSSAAA AGGGEAARAG  120
HVMRPKHQHS QSMDESMSIK AEDLVGAPGM DGMSTVEAKK AVSAAKLAEL ALVDPKRAKR  180
IWANRQSAAR SKERKMRYIG ELERKVQTLQ TEATTLSAQL SLLQRDTSGL TSENGELKLR  240
LQNMEQQVHL QDALNDTLKT EVQRLKVATG QMGNGGGMLM NYGGMSQAPH QFGGNQQMFH  300
NNQSMQSLLA THQLQQLQLH QQPQQQQQPM RPQHHHHQQQ PLHPLQAQQF QQAARDLKMK  360
GPMWGDGKSS GGGGI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64781.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356433	0.0	AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146433.1	0.0	transcription factor RF2a-like
Refseq	XP_020146434.1	0.0	transcription factor RF2a-like
Swissprot	Q69IL4	1e-156	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	M0Y0X7	0.0	M0Y0X7_HORVV; Uncharacterized protein
STRING	MLOC_64781.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-98	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]