PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64708.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 1267aa    MW: 144752 Da    PI: 9.4873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64708.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.61.7e-2110351132190
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
            B3    1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87  
                    f++vlt+ dv+ ++rlv+pkk+ae++      +  + + + l++ed+ g+sW + ++yr +s+ yv+ kGW +Fvk++ L++gD+v F++  g+ 
  MLOC_64708.7 1035 FDTVLTRGDVGMLNRLVVPKKHAEKYfpldssSTRTSKAIVLSFEDPAGKSWFFHYSYRSSSQNYVMFKGWTGFVKEKFLEAGDTVSFSRGvGEa 1129
                    8899*************************977555557788999********************************************9543554 PP

                    SEE CS
            B3   88 sef 90  
                    +++
  MLOC_64708.7 1130 TRG 1132
                    555 PP
2B330.85.1e-1011461237191
                    EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
            B3    1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                    f+ vlt sd+ +  + l++p + +  h    + +k ++  l++ed sg  ++W +++     sg+y+l kG + Fv++ +L +g +v F++ g  
  MLOC_64708.7 1146 FERVLTASDMESDgCSLMVPVNLVWPHpglrKTIKGRHAVLQFEDGSGngKVWPFQF---EASGQYYLMKGLNYFVNDRDLAAGYTVSFYRAG-- 1235
                    7889999999999899************8887777789999999987788*******...7778999999********************544.. PP

                    EE. CS
            B3   89 efe 91  
                     ++
  MLOC_64708.7 1236 -TR 1237
                    .44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525406.36E-50194458IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.2E-16200351IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.0E-47215485IPR002182NB-ARC
PRINTSPR003645.5E-12220235No hitNo description
PRINTSPR003645.5E-12293307No hitNo description
PRINTSPR003645.5E-12390404No hitNo description
SuperFamilySSF520587.48E-18528897IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.1E-6598727IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003645.5E-12653669No hitNo description
Gene3DG3DSA:3.80.10.102.1E-6798838IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.40.330.105.2E-2810261140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2210311125IPR015300DNA-binding pseudobarrel domain
CDDcd100174.12E-2010331124No hitNo description
PROSITE profilePS5086312.74610351140IPR003340B3 DNA binding domain
PfamPF023624.2E-1910351136IPR003340B3 DNA binding domain
SMARTSM010193.9E-1710351133IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1111411239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1211411238IPR015300DNA-binding pseudobarrel domain
CDDcd100179.20E-811451240No hitNo description
SMARTSM010190.01311461247IPR003340B3 DNA binding domain
PROSITE profilePS508636.96411861246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1267 aa     Download sequence    Send to blast
MRPLVKKLDM LLAPARGYST LCKRIKEVMH LLKHDVEEIS SYLDELTEVE DPPPMAKCWM  60
NEARDLSYDM EDYIDSLLFV PPGHFIKKKK KKKKKGKKKM VIKKRLKWCK QIVFTKQVSD  120
HGIKTSKIIH VNVPRLPNKP KVAKIILQFR IYVQEAIERY DKYRLHHCST LRRRLLSTGS  180
MLSVPIPYEE AAQIVTDGRM NEFISSLAAN NAADQQQLKV VSVLGSGCLG KTTLANVLYD  240
RIGMQFECRA FIRVSKKPDM KRLFRDLLSQ FHQKQPLPTS CNELGISDNI IKHLQDKRYL  300
IVIDDLWDLS VWDIIKYAFP KGNHGSRIII TTQIEDVALT CCCDHSEHVF EMKPLNIGHS  360
RELFFNRLFG SESDCLEEFK RVSNEIVDIC GGLPLATINI ASHLANQETE VSLDLLTDTR  420
DLLRSCLWSN STSERTKQVL NLSYSNLPDY LKTCLLYLHM YPVGSIIWKD DLVKQLVAEG  480
FIATREGKDQ DQEMIEKAAG LCFDALIDRR FIQPIYTKYN NKVLSCTVHE VVHDLIAQKS  540
AEENFIVVAD HNRKNIALSH KVRRLSLIFG DTIYAKTPAN ITKSQIRSFR FFGLFECMPC  600
ITEFKVLRVL NLQLSGHRGD NDPIDLTGIS ELFQLRYLKI TSDVCIKLPN QMQKLQYLET  660
LDIMDAPRVT AVPWDIINLP HLLHLTLPVD TYLLDWISSM TDSVISLWTL GKLNYLQHLH  720
LTSSSTRPSY HLERSVEALG YLIGGHGKLK TIVVAHVSSA QNTVVRGAPE VTISWDRMSP  780
PPLLQRFECP HSCFIFYRIP KWVTELGNLC ILKIAVKELH MICLGTLRGL HALTDLSLYV  840
ETAPIDKIIF DKAGFSVLKY CKLRFAAGIA WLKFEADAMP SLWKLMLVFN AIPRMDQNLV  900
FFHHSRPAMH QRGGAVIIVE HMPGLRVISA KFGGAASDLE YASRTVVSNH PSNPTINMQL  960
VCYSSNGKRS RKRKQQPYDV VKGQPDEYAK RLERPAEKRI STPTKSSLRL HVPAEITPKP  1020
MQITDNNVQR REHMFDTVLT RGDVGMLNRL VVPKKHAEKY FPLDSSSTRT SKAIVLSFED  1080
PAGKSWFFHY SYRSSSQNYV MFKGWTGFVK EKFLEAGDTV SFSRGVGEAT RGRLFIDCQN  1140
EQRYMFERVL TASDMESDGC SLMVPVNLVW PHPGLRKTIK GRHAVLQFED GSGNGKVWPF  1200
QFEASGQYYL MKGLNYFVND RDLAAGYTVS FYRAGTRLFV DSGRKDDKVA LGTRSRERIY  1260
PKIVRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-37103111394111B3 domain-containing transcription factor NGA1
5os9_B5e-37103111394111B3 domain-containing transcription factor NGA1
6j5t_C2e-34213662177616Disease resistance RPP13-like protein 4
6j5t_F2e-34213662177616Disease resistance RPP13-like protein 4
6j5t_G2e-34213662177616Disease resistance RPP13-like protein 4
6j5t_L2e-34213662177616Disease resistance RPP13-like protein 4
6j5t_O2e-34213662177616Disease resistance RPP13-like protein 4
6j5u_A2e-34213662177616Disease resistance RPP13-like protein 4
6j5v_A2e-34213662177616Disease resistance RPP13-like protein 4
6j5w_A2e-34213662177616Disease resistance RPP13-like protein 4
6j6i_C2e-34213662177616Disease resistance RPP13-like protein 4
6j6i_F2e-34213662177616Disease resistance RPP13-like protein 4
6j6i_G2e-34213662177616Disease resistance RPP13-like protein 4
6j6i_L2e-34213662177616Disease resistance RPP13-like protein 4
6j6i_O2e-34213662177616Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894KKKKKKK
28997KKKKKKGKK
38998KKKKKKGKKK
490104KKKKKGKKKMVIKKR
5967974KRSRKRKQ
6969974SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64708.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692510.0AK369251.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199675.10.0putative disease resistance RPP13-like protein 2
TrEMBLA0A287SZR80.0A0A287SZR8_HORVV; Uncharacterized protein
STRINGMLOC_64708.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-37B3 family protein