PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64708.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 1279aa    MW: 145977 Da    PI: 9.4541
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64708.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.61.7e-2110471144190
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
            B3    1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87  
                    f++vlt+ dv+ ++rlv+pkk+ae++      +  + + + l++ed+ g+sW + ++yr +s+ yv+ kGW +Fvk++ L++gD+v F++  g+ 
  MLOC_64708.2 1047 FDTVLTRGDVGMLNRLVVPKKHAEKYfpldssSTRTSKAIVLSFEDPAGKSWFFHYSYRSSSQNYVMFKGWTGFVKEKFLEAGDTVSFSRGvGEa 1141
                    8899*************************977555557788999********************************************9543554 PP

                    SEE CS
            B3   88 sef 90  
                    +++
  MLOC_64708.2 1142 TRG 1144
                    555 PP
2B330.85.1e-1011581249191
                    EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
            B3    1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                    f+ vlt sd+ +  + l++p + +  h    + +k ++  l++ed sg  ++W +++     sg+y+l kG + Fv++ +L +g +v F++ g  
  MLOC_64708.2 1158 FERVLTASDMESDgCSLMVPVNLVWPHpglrKTIKGRHAVLQFEDGSGngKVWPFQF---EASGQYYLMKGLNYFVNDRDLAAGYTVSFYRAG-- 1247
                    7889999999999899************8887777789999999987788*******...7778999999********************544.. PP

                    EE. CS
            B3   89 efe 91  
                     ++
  MLOC_64708.2 1248 -TR 1249
                    .44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525406.45E-50207471IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.2E-16213364IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.0E-47228498IPR002182NB-ARC
PRINTSPR003645.7E-12233248No hitNo description
PRINTSPR003645.7E-12306320No hitNo description
PRINTSPR003645.7E-12403417No hitNo description
SuperFamilySSF520587.48E-18541910IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-6611740IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003645.7E-12666682No hitNo description
Gene3DG3DSA:3.80.10.102.0E-6811851IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.40.330.105.2E-2810381152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-2210431137IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-2010451136No hitNo description
PROSITE profilePS5086312.74610471152IPR003340B3 DNA binding domain
PfamPF023624.2E-1910471148IPR003340B3 DNA binding domain
SMARTSM010193.9E-1710471145IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-1111531251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1211531250IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-811571252No hitNo description
SMARTSM010190.01311581259IPR003340B3 DNA binding domain
PROSITE profilePS508636.96411981258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1279 aa     Download sequence    Send to blast
MLFDSSVSAS LGTMRPLVKK LDMLLAPARG YSTLCKRIKE VMHLLKHDVE EISSYLDELT  60
EVEDPPPMAK CWMNEARDLS YDMEDYIDSL LFVPPGHFIK KKKKKKKKGK KKMVIKKRLK  120
WCKQIVFTKQ VSDHGIKTSK IIHVNVPRLP NKPKVAKIIL QFRIYVQEAI ERYDKYRLHH  180
CSTLRRRLLS TGSMLSVPIP YEEAAQIVTD GRMNEFISSL AANNAADQQQ LKVVSVLGSG  240
CLGKTTLANV LYDRIGMQFE CRAFIRVSKK PDMKRLFRDL LSQFHQKQPL PTSCNELGIS  300
DNIIKHLQDK RYLIVIDDLW DLSVWDIIKY AFPKGNHGSR IIITTQIEDV ALTCCCDHSE  360
HVFEMKPLNI GHSRELFFNR LFGSESDCLE EFKRVSNEIV DICGGLPLAT INIASHLANQ  420
ETEVSLDLLT DTRDLLRSCL WSNSTSERTK QVLNLSYSNL PDYLKTCLLY LHMYPVGSII  480
WKDDLVKQLV AEGFIATREG KDQDQEMIEK AAGLCFDALI DRRFIQPIYT KYNNKVLSCT  540
VHEVVHDLIA QKSAEENFIV VADHNRKNIA LSHKVRRLSL IFGDTIYAKT PANITKSQIR  600
SFRFFGLFEC MPCITEFKVL RVLNLQLSGH RGDNDPIDLT GISELFQLRY LKITSDVCIK  660
LPNQMQKLQY LETLDIMDAP RVTAVPWDII NLPHLLHLTL PVDTYLLDWI SSMTDSVISL  720
WTLGKLNYLQ HLHLTSSSTR PSYHLERSVE ALGYLIGGHG KLKTIVVAHV SSAQNTVVRG  780
APEVTISWDR MSPPPLLQRF ECPHSCFIFY RIPKWVTELG NLCILKIAVK ELHMICLGTL  840
RGLHALTDLS LYVETAPIDK IIFDKAGFSV LKYCKLRFAA GIAWLKFEAD AMPSLWKLML  900
VFNAIPRMDQ NLVFFHHSRP AMHQRGGAVI IVEHMPGLRV ISAKFGGAAS DLEYASRTVV  960
SNHPSNPTIN MQLVCYSSNG KRSRKRKQQP YDVVKGQPDE YAKRLERPAE KRISTPTKSS  1020
LRLHVPEITP KPMQITDNNV QRREHMFDTV LTRGDVGMLN RLVVPKKHAE KYFPLDSSST  1080
RTSKAIVLSF EDPAGKSWFF HYSYRSSSQN YVMFKGWTGF VKEKFLEAGD TVSFSRGVGE  1140
ATRGRLFIDC QNEQRYMFER VLTASDMESD GCSLMVPVNL VWPHPGLRKT IKGRHAVLQF  1200
EDGSGNGKVW PFQFEASGQY YLMKGLNYFV NDRDLAAGYT VSFYRAGTRL FVDSGRKDDK  1260
VALGTRSRER IYPKIVRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-37104311514111B3 domain-containing transcription factor NGA1
5os9_B5e-37104311514111B3 domain-containing transcription factor NGA1
6j5t_C1e-34226675177616Disease resistance RPP13-like protein 4
6j5t_F1e-34226675177616Disease resistance RPP13-like protein 4
6j5t_G1e-34226675177616Disease resistance RPP13-like protein 4
6j5t_L1e-34226675177616Disease resistance RPP13-like protein 4
6j5t_O1e-34226675177616Disease resistance RPP13-like protein 4
6j5u_A1e-34226675177616Disease resistance RPP13-like protein 4
6j5v_A1e-34226675177616Disease resistance RPP13-like protein 4
6j5w_A1e-34226675177616Disease resistance RPP13-like protein 4
6j6i_C1e-34226675177616Disease resistance RPP13-like protein 4
6j6i_F1e-34226675177616Disease resistance RPP13-like protein 4
6j6i_G1e-34226675177616Disease resistance RPP13-like protein 4
6j6i_L1e-34226675177616Disease resistance RPP13-like protein 4
6j6i_O1e-34226675177616Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107KKKKKKK
2102110KKKKKKGKK
3102111KKKKKKGKKK
4103117KKKKKGKKKMVIKKR
5980987KRSRKRKQ
6982987SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64708.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692510.0AK369251.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199675.10.0putative disease resistance RPP13-like protein 2
TrEMBLA0A287SZS20.0A0A287SZS2_HORVV; Uncharacterized protein
STRINGMLOC_64708.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-37B3 family protein