PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64556.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 274aa MW: 28728.2 Da PI: 5.424 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21 | 8.8e-07 | 17 | 40 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg +F r ++L+ H++t H MLOC_64556.2 17 FPCPDCGDVFVRAESLHLHQSTrH 40 89*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.118 | 17 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 40 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 6.23E-16 | 42 | 273 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.7E-11 | 43 | 273 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MVVDPAGGGS SMRAAIFPCP DCGDVFVRAE SLHLHQSTRH AVSELGPEDT SRNIIEIIFQ 60 SSWLKKQSPV CAVDRILKVH NAPATLARFE AYRDAVKARA RGGRTGAGRC TADGNELLRF 120 HCAALACSLG AGGATHLCDG AGNSSCAACG IVRDGFKFRA PGVRTMATSG RAHDDAVGAE 180 EGEGGGDGER RRAMLVCRVI AGRVKRRCEG AAESAAGKEE AEASPSPSPE EEEAEAEEEY 240 DSVAGTAGVY SSLDELEVFN PTAILPCFVV VYKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64556.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162022.1 | 1e-153 | uncharacterized protein LOC109747356 | ||||
TrEMBL | A0A3B6B902 | 1e-159 | A0A3B6B902_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_64556.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2633 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-61 | C2H2-like zinc finger protein |