PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_64376.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29114.7 Da PI: 10.0962 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.5 | 3e-10 | 38 | 133 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++++s+v ++++lv+ k++a eh ++ t+++ ++ g + W+ ++++ + +++ +l+ +F+++n+++egD+++F+ + + +++ MLOC_64376.6 38 VQMKKSNVKRHANLVIRKDYALEHFP---REYTIVILQLPGknKDWKGTFRIrpsgmsDAGRCNLYLG----NFARDNHVREGDICLFQPMTNvKQR 127 68999*******************63...345677777655569999999885544444444446666....*****************99888999 PP ..EEEE CS B3 91 elvvkv 96 +++vkv MLOC_64376.6 128 RFLVKV 133 999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-13 | 28 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-11 | 31 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.75E-9 | 36 | 118 | No hit | No description |
Pfam | PF02362 | 6.4E-8 | 37 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MLSNNYVVSV QCYLTKAQKV KIAAIIEKIQ SKITVLVVQM KKSNVKRHAN LVIRKDYALE 60 HFPREYTIVI LQLPGKNKDW KGTFRIRPSG MSDAGRCNLY LGNFARDNHV REGDICLFQP 120 MTNVKQRRFL VKVHILHKVS IDGTTQSSAR KRPDSDGCLK EDSSHNYKSA NTPAVSYTSK 180 EFSEENPAAD EVMELDDLQT LSKDYVLSGK CDLTVAQGAK INALVDKIRP QIPVLVVQMK 240 KSSSTNGAIL TIKKDYAIK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_64376.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK251585 | 0.0 | AK251585.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf123m20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198704.1 | 1e-155 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A287MJN3 | 0.0 | A0A287MJN3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_64376.1 | 0.0 | (Hordeum vulgare) |