PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64362.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 129aa MW: 14203.2 Da PI: 10.5226 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.7e-11 | 42 | 100 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i+eLe+kv+ L++e ++L +l+ l+ + l++e+ MLOC_64362.2 42 KRAKRIMANRQSAARSKERKMRYIAELERKVQCLQTEATTLSAQLSLLQRDTSGLTNEN 100 9***********************************************99988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.9E-17 | 38 | 102 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 40 | 103 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-10 | 42 | 97 | No hit | No description |
Pfam | PF00170 | 7.5E-10 | 42 | 98 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.27E-11 | 42 | 93 | No hit | No description |
CDD | cd14703 | 1.25E-18 | 43 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSMDGSTSFA SASSGASGRH GADAKKAISD AKLAELALVD PKRAKRIMAN RQSAARSKER 60 KMRYIAELER KVQCLQTEAT TLSAQLSLLQ RDTSGLTNEN GDLKLQVQTM EQQVRLQDGK 120 IFYVSQIRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64362.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366888 | 0.0 | AK366888.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047M20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150534.1 | 2e-75 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 2e-53 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A446L800 | 3e-85 | A0A446L800_TRITD; Uncharacterized protein | ||||
STRING | MLOC_64362.1 | 1e-77 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-50 | bZIP family protein |
Publications ? help Back to Top | |||
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