PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64242.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LSD | ||||||||
Protein Properties | Length: 223aa MW: 23424.3 Da PI: 8.3894 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.1 | 6e-13 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V MLOC_64242.2 51 CHGCRSVLLYPRGAPSVCCAVCHAV 75 ************************9 PP | |||||||
2 | zf-LSD1 | 42.2 | 1.3e-13 | 90 | 114 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV MLOC_64242.2 90 CVGCRTLLMYTRNATTVRCSCCDTV 114 ************************9 PP | |||||||
3 | zf-LSD1 | 48.5 | 1.4e-15 | 131 | 155 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ MLOC_64242.2 131 CGQCQTVLMYPYGASSVKCAICNFI 155 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.2E-12 | 48 | 76 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 51 | 75 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.8E-13 | 87 | 116 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-10 | 90 | 114 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-12 | 128 | 157 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.2E-14 | 131 | 155 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEQGADTRWA IGFGWSSGQS VIGLVCEKLS VLPRPDGPGR IFAGMQSQIV CHGCRSVLLY 60 PRGAPSVCCA VCHAVTSAPP PGMEMAQLIC VGCRTLLMYT RNATTVRCSC CDTVNLARPA 120 PPVNSIAHVN CGQCQTVLMY PYGASSVKCA ICNFITNIGM NTMRPLPATM HAPNGISYSV 180 PSTSAPSTQS QNVTVVVENP MTVDDKGKLV SNVVVGVTTG GKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64242.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359579 | 0.0 | AK359579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099G04. | |||
GenBank | EU545233 | 0.0 | EU545233.1 Hordeum vulgare subsp. vulgare clone CEa0008p08 LSD1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198652.1 | 1e-124 | protein LOL2-like | ||||
Swissprot | Q2QMB3 | 1e-101 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A3B6KCJ1 | 1e-130 | A0A3B6KCJ1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SPM2 | 1e-130 | A0A446SPM2_TRITD; Uncharacterized protein | ||||
STRING | MLOC_64242.2 | 1e-163 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-53 | lsd one like 1 |
Publications ? help Back to Top | |||
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