PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64242.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LSD | ||||||||
Protein Properties | Length: 179aa MW: 18795 Da PI: 8.4389 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.5 | 4.4e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGApsV+Ca+C++V MLOC_64242.1 7 CHGCRSVLLYPRGAPSVCCAVCHAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 42.6 | 9.8e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r+A+ VRC++CdtV MLOC_64242.1 46 CVGCRTLLMYTRNATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49 | 1e-15 | 87 | 111 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GA+sV+Ca+C+++ MLOC_64242.1 87 CGQCQTVLMYPYGASSVKCAICNFI 111 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.9E-12 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.0E-13 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.4E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-12 | 84 | 113 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.3E-14 | 87 | 111 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTSAPPPGME MAQLICVGCR TLLMYTRNAT 60 TVRCSCCDTV NLARPAPPVN SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITNIGMNTMR 120 PLPATMHAPN GISYSVPSTS APSTQSQNVT VVVENPMTVD DKGKLVSNVV VGVTTGGKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64242.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359579 | 0.0 | AK359579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099G04. | |||
GenBank | EU545233 | 0.0 | EU545233.1 Hordeum vulgare subsp. vulgare clone CEa0008p08 LSD1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198652.1 | 1e-124 | protein LOL2-like | ||||
Swissprot | Q2QMB3 | 1e-101 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | B2CR52 | 1e-126 | B2CR52_HORVV; LSD1-like protein | ||||
STRING | MLOC_64242.2 | 1e-126 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-53 | lsd one like 1 |
Publications ? help Back to Top | |||
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