PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64234.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 335aa    MW: 35591 Da    PI: 9.0177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64234.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05188209223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +C+dC+++F   ++L+ H +tH
  MLOC_64234.2 188 PCSDCDEVFVKAESLELHRSTH 209
                   6********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.286187214IPR007087Zinc finger, C2H2
PROSITE patternPS000280189210IPR007087Zinc finger, C2H2
SuperFamilySSF563992.68E-5212334No hitNo description
Gene3DG3DSA:3.90.228.103.8E-4216334IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDATAAGEKM SIAGEKKQQR KSGTSLWGAM GWKSRSRPAG AGDSKNNRSE RETTTTTTTR  60
RSVGIGRSMT CPGSICGTKE SAVLSRESCR SSGRNVSSSG SLKAPDNDVL SVPVVAPGAV  120
VSASSSFNSE TSVATTATTA SSSSSSSSPL SSIVAGSRSF RKLSGCYYEC HSVLDPRTSL  180
VGGAGMLPCS DCDEVFVKAE SLELHRSTHH AVSELGAEDT SRNVVEIIFQ SSWLVGKPRA  240
APICRIEMIL KVHSSGKTVE RFEQYRERVK ATAASSTDEL ARRSFPRCAA DGNEILRFHC  300
TTFTCSLGLA GATSLCRSSP QHCKLCSIIR DGFRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64234.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508620.0AK250862.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100a05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154431.10.0uncharacterized protein LOC109739792
TrEMBLM0XYP90.0M0XYP9_HORVV; Uncharacterized protein
STRINGMLOC_64234.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-55C2H2-like zinc finger protein