PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64150.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 331aa MW: 36802 Da PI: 8.0435

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64150.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	10	30	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++sF++ +L H+ +H MLOC_64150.2 10 CKHCKRSFPSGASLGGHMAVH 30 ******************998 PP
2	zf-C2H2	19.3	3.1e-06	79	100	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C +sF +++ L H+rtH MLOC_64150.2 79 ECQLCFRSFASPDALSMHMRTH 100 6********************9 PP
3	zf-C2H2	14.6	9.7e-05	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg++F++ L H ++H MLOC_64150.2 239 YECKICGQVFTSGRALGGHRKRH 261 99*****************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.7E-5	6	34	No hit	No description
PROSITE profile	PS50157	10.076	8	35	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.6E-7	8	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.8	8	30	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	10	30	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.157	78	105	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.7E-5	78	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	78	100	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-4	79	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.43E-8	79	100	No hit	No description
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.43E-8	234	261	No hit	No description
PROSITE profile	PS50157	10.658	239	262	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-8	239	261	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	239	261	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	241	261	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MPPRGRKHWC KHCKRSFPSG ASLGGHMAVH RNRRKKQPSR TPSIDGERYG LRERCQKTSW 60 LLDSVSSDDD RWALFPKTEC QLCFRSFASP DALSMHMRTH KRRRKMAVEH QAAVGDGDDL 120 NVPVPAAPVM RKKRSRRMVL DTVPSPVMEA YGMEEVDAAC ILVMLSGDHG MCPAFVDCGE 180 GGEMDDVAFD ALMTEMGLTS PDHHGPVGDN ELMEPEPSSS YEEVKFVSLS KVLKATANYE 240 CKICGQVFTS GRALGGHRKR HSFADHGRAP TVTKSEATQP CEELVPPDHR SLVLNLPSPS 300 IWNCNTARPK PEPNQLLVAS SLWDERMLGV I

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64150.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232783.1	1e-130	uncharacterized protein LOC104582938
TrEMBL	A0A3B6INY2	0.0	A0A3B6INY2_WHEAT; Uncharacterized protein
TrEMBL	A0A446RUF0	0.0	A0A446RUF0_TRITD; Uncharacterized protein
STRING	MLOC_64150.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	7e-08	C2H2-like zinc finger protein