PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64055.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRF
Protein Properties Length: 313aa    MW: 34657.5 Da    PI: 9.3783
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64055.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC763.8e-2489133145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+epgrCrRtDGKkWRCsr++++ +k+C+rH+hrg++rsrk++e+
  MLOC_64055.4  89 DPEPGRCRRTDGKKWRCSREAYGESKYCDRHMHRGKNRSRKPVEP 133
                   79****************************************985 PP
2QLQ55.51.7e-191347236
           QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                   FTa+Q+ +L++Q+l+yKy+aa+ +vP+eL+++++
  MLOC_64055.4 13 LFTASQWRELEHQALIYKYMAAGSQVPHELVVPLR 47
                  5*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-81248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.2041348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-131446IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.07489133IPR014977WRC domain
PfamPF088792.3E-1990132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMLGGQGGGG RCLFTASQWR ELEHQALIYK YMAAGSQVPH ELVVPLRHRD AAFASIDTAP  60
SLACFPPPQP SLGWGLYGTG AQYARKPEDP EPGRCRRTDG KKWRCSREAY GESKYCDRHM  120
HRGKNRSRKP VEPMSSSSSS VSSPAASYRQ TTLSMSPPTP ADAPSYGHGH GQDHLRAAAA  180
QSQINPLQLH LDTRSPPPSY HRYAPAQQYG GSYFTGRQQE AEAEARRRQH FLALGADLSL  240
DKPDATAAAS STTEDKPLRR FFDEWPRDGN AVEGRPWNMG HRDETQLSMS IPTTTASHPD  300
LAAYRRRNGT YYA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64055.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146985.11e-179growth-regulating factor 2-like isoform X1
RefseqXP_020146986.11e-180growth-regulating factor 2-like isoform X2
SwissprotQ6AWY73e-89GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLM0XXY00.0M0XXY0_HORVV; Uncharacterized protein
STRINGMLOC_64055.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.19e-41growth-regulating factor 5