PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64012.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 144aa MW: 16085.7 Da PI: 9.7173 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.5 | 7.4e-15 | 65 | 104 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C Nk e+ MLOC_64012.2 65 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 104 689*************************.********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.8E-13 | 64 | 104 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 18.424 | 65 | 144 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.0E-11 | 66 | 101 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEPGNQQQVQ PPAPPAAQLM APPHPPQPRP VAQVHAVFSS TRQWPMSFTP IKPMVEIKSV 60 TPPKRKKQCN CKNSHCLKLY CECFAAGLYC DGCNCKQCGN KVENEHARQE AINSTKLRNP 120 KAFQPKIENV PSTLSVRKVH SFLL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64012.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227668.1 | 3e-64 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Refseq | XP_014753297.1 | 2e-64 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | A0A287X2X1 | 1e-95 | A0A287X2X1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_64012.1 | 9e-96 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 2e-28 | Tesmin/TSO1-like CXC domain-containing protein |