PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63989.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 364aa    MW: 38416.6 Da    PI: 8.6345
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63989.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.4e-36351432112
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaes 77 
                    g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a pai+el+++                     +           
  MLOC_63989.2  35 SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDELPSLdpaafaampadhqaapragkqQ----------- 120
                   689*************************************************************5555444433332222222211........... PP

           TCP  78 ssssasnsssgkaaksaakskksqksaasalnlak 112
                               + + + +s+ s++s+ s l+l++
  MLOC_63989.2 121 ------------QGSRSLCSSTSETSKGSELSLSR 143
                   ............22222233333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3536157IPR005333Transcription factor, TCP
PROSITE profilePS5136933.7073795IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELVPGGSPP PAGQQQQQPH LLHGSASRIC RVKASGGKDR HSKVYTSKGI RDRRVRLSVP  60
TAIQFYDLQD RLGFDQPSKA IEWLINAASP AIDELPSLDP AAFAAMPADH QAAPRAGKQQ  120
QGSRSLCSST SETSKGSELS LSRSDCRVGG GSSRDKEVTV ASNPSTQAGS FTELLTGAGS  180
AGAAQHRQSW QQQRQLAVSA VAVTADCIGI AHPGKGGGAQ VVPTYPGFRF GNAPPLGMVP  240
AQPFNFGTSA QMTHFSSLVQ DGLSAAPAPA QAGDYSLDFS INSGYMGANR GPLQSNSPHF  300
SSHHHHQQQQ QLQDLDDGPS PPFLYEQAAA TAPHLASENH LGGTAAMQLW NGFRHATMKE  360
KSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-254296155Putative transcription factor PCF6
5zkt_B4e-254296155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63989.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582890.0AK358289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147324.11e-170transcription factor PCF6-like
SwissprotQ10CE81e-100PCF6_ORYSJ; Transcription factor PCF6
TrEMBLF2D3320.0F2D332_HORVV; Predicted protein
STRINGMLOC_63989.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2