PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63989.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 400aa    MW: 41618.1 Da    PI: 8.6327
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63989.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.6e-36711792112
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaes 77 
                    g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a pai+el+++                     +           
  MLOC_63989.1  71 SGGKDRHSKVYTSKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDELPSLdpaafaampadhqaapragkqQ----------- 156
                   689*************************************************************5554444333332222222211........... PP

           TCP  78 ssssasnsssgkaaksaakskksqksaasalnlak 112
                               + + + +s+ s++s+ s l+l++
  MLOC_63989.1 157 ------------QGSRSLCSSTSETSKGSELSLSR 179
                   ............22222233333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-3572193IPR005333Transcription factor, TCP
PROSITE profilePS5136933.70773131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MESADAAGGA AGPGRGPSAK RMRGLMGSGG DGGGDGMELV PGGSPPPAGQ QQQQPHLLHG  60
SASRICRVKA SGGKDRHSKV YTSKGIRDRR VRLSVPTAIQ FYDLQDRLGF DQPSKAIEWL  120
INAASPAIDE LPSLDPAAFA AMPADHQAAP RAGKQQQGSR SLCSSTSETS KGSELSLSRS  180
DCRVGGGSSR DKEVTVASNP STQAGSFTEL LTGAGSAGAA QHRQSWQQQR QLAVSAVAVT  240
ADCIGIAHPG KGGGAQVVPT YPGFRFGNAP PLGMVPAQPF NFGTSAQMTH FSSLVQDGLS  300
AAPAPAQAGD YSLDFSINSG YMGANRGPLQ SNSPHFSSHH HHQQQQQLQD LDDGPSPPFL  360
YEQAAATAPH LASENHLGGT AAMQLWNGFR HATMKEKSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2578132155Putative transcription factor PCF6
5zkt_B5e-2578132155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582890.0AK358289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147324.11e-171transcription factor PCF6-like
SwissprotQ10CE81e-99PCF6_ORYSJ; Transcription factor PCF6
TrEMBLF2D3320.0F2D332_HORVV; Predicted protein
STRINGMLOC_63989.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-35TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2