PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_63964.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37281.9 Da PI: 8.5853 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 65 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v+++G ++W++I r ++ gR++k+c++rw + MLOC_63964.1 65 RGPWSPEEDGALRRLVERHGARNWTAIGRGVP-GRSGKSCRLRWCNQ 110 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 117 | 159 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+++lG++ W++Iar + gRt++ +k++w+ MLOC_63964.1 117 RRPFTAEEDAAIARAHARLGNR-WAAIARLLR-GRTDNAVKNHWN 159 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.143 | 60 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-29 | 62 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-17 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-14 | 67 | 109 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 116 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 117 | 159 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.501 | 117 | 166 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 118 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 119 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGPRAASCCC RPHHRLQVVQ IPPPISSPPT TTTTARLAAV HFNRSSQPAS QADRSIVMEG 60 CDRIRGPWSP EEDGALRRLV ERHGARNWTA IGRGVPGRSG KSCRLRWCNQ LSPGVERRPF 120 TAEEDAAIAR AHARLGNRWA AIARLLRGRT DNAVKNHWNC SLKRRLADVG VAEEEERPCK 180 RASVSPESTS GSGSDRSDLS NGGVLNFGLG QVYRPLARTG RFEPADCAMS QRHEVELEEE 240 AEDPLTSLSL SLPGTDAHGF RHDSSHSHFH QPSPSPSPPP APAPTSYPFS PEFAAVMQEM 300 VLDEVRRYIS GVGCSANLPS MPQVVDGVMR AAAERAGGLA RMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-36 | 62 | 166 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_63964.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364159 | 0.0 | AK364159.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022D22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162234.1 | 1e-151 | transcription factor MYB44-like | ||||
TrEMBL | A0A287XXX2 | 0.0 | A0A287XXX2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_63964.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-47 | myb domain protein 77 |