PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_63597.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 408aa MW: 45582.9 Da PI: 7.209

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_63597.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl MLOC_63597.4 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.387	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-22	145	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MYHQHQGPSE LFTTRTTFPM ERHLFLHGGS TQGDSGLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQVNVGT NKNTIGCAIV 120 ADGMPGTSVP AMINTNVIPQ PEKTMQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK 180 YLQAVLEQAQ ESLGKQNSGP ANLEDAKLKI SELVSQVSNE CFGNAVTEIK ESSSMHRLEP 240 RQIQFMESSS TNNCLAAAGG FINEHRLHSH GMLKAYDDSS IFCRKQSPGH EYQFSLNRSL 300 SERKMGHLHN VNEYHKAEFG SESDTEIQHE YITAQKNGRG STTSSASGSK ERDAGRLYLE 360 EPNCKRQAVE HSGFEHPSSG KKLDLNTQNT DDGDQGYRHF DLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MYHQHQGPSE LFTTRTTFPM ERHLFLHGGS TQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQVNVGT NKNTIGCAIV  120
ADGMPGTSVP AMINTNVIPQ PEKTMQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK  180
YLQAVLEQAQ ESLGKQNSGP ANLEDAKLKI SELVSQVSNE CFGNAVTEIK ESSSMHRLEP  240
RQIQFMESSS TNNCLAAAGG FINEHRLHSH GMLKAYDDSS IFCRKQSPGH EYQFSLNRSL  300
SERKMGHLHN VNEYHKAEFG SESDTEIQHE YITAQKNGRG STTSSASGSK ERDAGRLYLE  360
EPNCKRQAVE HSGFEHPSSG KKLDLNTQNT DDGDQGYRHF DLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_63597.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181427.1	0.0	myb-related protein 1-like isoform X1
Refseq	XP_020181428.1	0.0	myb-related protein 1-like isoform X1
TrEMBL	A0A287G2X0	0.0	A0A287G2X0_HORVV; Uncharacterized protein
STRING	MLOC_63597.4	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	9e-96	myb-related protein 1