PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_63532.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HSF | ||||||||
Protein Properties | Length: 235aa MW: 26070.6 Da PI: 7.6021 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.8 | 1.2e-31 | 19 | 111 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k++++++d++++ ++ w +n+f+vld+ f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ + weF+h+sF +g+ +ll i MLOC_63532.1 19 FVAKTFHMVSDPATDAVVCWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDPDM---------WEFAHESFLRGQAKLLPLIV 106 9********************999****************************************9988.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkk++ MLOC_63532.1 107 RKKKR 111 *9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.0E-35 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-47 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.9E-31 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.6E-28 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-17 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-17 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-17 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGSECKGHQH QDDGGVAPFV AKTFHMVSDP ATDAVVCWGG ASNTFLVLDP AAFSDYLLPS 60 YFKHRNFASF VRQLNTYGFR KVDPDMWEFA HESFLRGQAK LLPLIVRKKK RAGAGAAGRE 120 VCEEEEEEVR GTIQAVQRLR DERRGMEEEL QAMDRRLRAA ENRPGQMMAF LGKLADDPGV 180 VLRAMVAKKE ELAAAGAGGM DPRPDKRRRI GAEAEEAAQS RAVPFPFSNA GHVFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-26 | 14 | 108 | 15 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 209 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_63532.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353849 | 0.0 | AK353849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003D09. | |||
GenBank | AK370538 | 0.0 | AK370538.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112D03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179067.1 | 1e-146 | heat stress transcription factor C-1b-like | ||||
Swissprot | Q942D6 | 1e-125 | HFC1B_ORYSJ; Heat stress transcription factor C-1b | ||||
TrEMBL | F2CQE7 | 1e-172 | F2CQE7_HORVV; Predicted protein | ||||
STRING | MLOC_63532.1 | 1e-173 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-56 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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