PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_63425.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 147aa MW: 16727.8 Da PI: 9.5273 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.9 | 1.2e-13 | 63 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I +s +k +lg+f + +Aa+a++ a+ k++g MLOC_63425.2 63 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 112 9***************999754...5**********99************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-5 | 2 | 27 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-14 | 61 | 122 | No hit | No description |
SuperFamily | SSF54171 | 5.04E-17 | 61 | 122 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 62 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.162 | 62 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 62 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 63 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-8 | 63 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 102 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MEEKAGRAYD LAALKYWGAS THINFPVEDY QEELEVMKNM TRLEYVAHIR RKSSGFSRGA 60 SMYRGVTRHH QQGRWQARIG RVSGNKDLYL GTFSAEADAA EAYDVAAIKF RGVSAVTNFE 120 ISRYDVDKIM ESSTLLPADQ VRRRKDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_63425.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 0.0 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346556.1 | 2e-87 | uncharacterized protein LOC100217129 | ||||
Refseq | XP_008665715.1 | 2e-87 | putative AP2/EREBP transcription factor superfamily protein isoform X2 | ||||
Refseq | XP_015694507.1 | 3e-88 | PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 9e-86 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A287SGD9 | 1e-100 | A0A287SGD9_HORVV; Uncharacterized protein | ||||
TrEMBL | M0XVI1 | 1e-99 | M0XVI1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_63425.1 | 1e-100 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 3e-71 | AP2 family protein |
Publications ? help Back to Top | |||
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