PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63299.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CAMTA
Protein Properties Length: 589aa    MW: 65911.4 Da    PI: 4.6896
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63299.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11802.8e-56211363117
          CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                   +e ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+
  MLOC_63299.1  21 QEaQSRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRT 117
                   5559********************************************************************************************* PP

          CG-1  99 ywlLeeelekivlvhylev 117
                   ywlLee + +ivlvhyle 
  MLOC_63299.1 118 YWLLEEGFMNIVLVHYLEI 136
                   ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.23816142IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-7819137IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.5E-8436523IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.78E-19437523IPR014756Immunoglobulin E-set
PfamPF018332.9E-7437510IPR002909IPT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAEMHKYGLS NQPPDIPQIL QEAQSRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QSFSRSKEAE DSPACSNSFA SQSQVASQTM DAESPYSGQI  180
SEYEDAETDN CRASSRYHPF IEMQQPVDGA MMDNRLGTPA PSTSVNNLGY QDEKQARTAN  240
ISNNFVTHHG IASVFNDVGA GLRSGSKTAL DSVHFGEPFP EYPTGFTEPT LYSSVTTMGS  300
GNLDDNSRLE TLMTEALYTN NLTQKETDAL SAAGMTSSQV HNDSYTDGSM GYPLLKQSSL  360
DLFKIEPNGL KKFDSFSKWM SDELAADLDI KSSSDAFWSS TETVNVADGS SMSIPINEQL  420
DAYVVSPSLS QDQLFSIIDV SPSWAYTGSQ YKVLITGTFL TNKEHVENCN WSCMFGDVEV  480
PVEVLADGSL RCYTPVHQSG RVPFYVTCSN RVACSEVREF EFRDSETQYM EAADPHITGI  540
NEMHLHIRLE KLLSLGPDDY ENYVLSVGNE KSELISTIGS LMLDDKFTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935313e-57FP093531.1 Phyllostachys edulis cDNA clone: bphyem002j22, full insert sequence.
GenBankFP1002373e-57FP100237.1 Phyllostachys edulis cDNA clone: bphyst001c17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196708.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A287HJC50.0A0A287HJC5_HORVV; Uncharacterized protein
STRINGMLOC_63299.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-124signal responsive 1