PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6327.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HB-other

Protein Properties

Length: 1019aa MW: 114871 Da PI: 7.8001

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6327.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.8	4.3e-14	16	67	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ MLOC_6327.5 16 KKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTHNQVRIWFKERRRKERR 67 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.479	8	68	IPR001356	Homeobox domain
SMART	SM00389	1.6E-12	10	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-13	10	75	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-14	15	76	IPR009057	Homeodomain-like
CDD	cd00086	1.83E-7	15	58	No hit	No description
Pfam	PF00046	1.9E-11	16	67	IPR001356	Homeobox domain
PROSITE profile	PS50827	10.183	312	371	IPR018501	DDT domain
SMART	SM00571	0.0017	312	371	IPR018501	DDT domain
Pfam	PF02791	3.9E-7	314	366	IPR018501	DDT domain
Pfam	PF15612	9.8E-6	590	621	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-10	713	784	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT HNQVRIWFKE 60 RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR 120 KIMSPTARRS TLPFENNDPM RRHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR 180 PFEDCDRKLA QVQRQTLPRK KVNKKSRPPP SKRKVPCGRV TDLTEHPPVE CHLSVDESES 240 SELRTEQATL VDDEELELSE LQAGPNPLRC SAHLSSTGRH GCPLCKDLLA RFPPPGVRMK 300 QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SSLLGKVHVS 360 LLKLLMLNTE RGSGSVFVPR SSKDSRFLSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV 420 LVASGFGSDH HILNRNFFNK EKNQMVKYGL RPRTLKGELF ELLSKKGSGG LKVAELAKSP 480 QIIDLNLSGA SEVEQLIFST LSGDITLFEK IAPSAYRLRV DPRIKGKEDP RSDTEDSGTV 540 DDGGDASSSG DESDGPQESY PEHESRIVRW KQKNIHKNMN KCSEIDESYS GERWLLGLME 600 GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKSTRTI 660 YQSSDEYLNR PGSSHSFDSS MQGQSGSLRG QDYIADSGAN ESPTRFAHQP QIVLLGSDRR 720 YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS 780 MKKRQSCLFE GMKKHLEDGC VVALTASSDS SRSETSSGNR YSPKPSSGDG ASPLSDIDSA 840 SVPTYLAGNL QNASSAIGIE VGRRSDEKMS KWERLQALDK WIWTSFYSSL TAVKCGKRSF 900 KESLVHCESC HDLYWRDERH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL 960 PSQLQALKAA IHAIEARMPT AAFAGLWMKS SHNLWVKRLR RTSSLPELLQ VSIFFLFTS

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT HNQVRIWFKE  60
RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR  120
KIMSPTARRS TLPFENNDPM RRHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR  180
PFEDCDRKLA QVQRQTLPRK KVNKKSRPPP SKRKVPCGRV TDLTEHPPVE CHLSVDESES  240
SELRTEQATL VDDEELELSE LQAGPNPLRC SAHLSSTGRH GCPLCKDLLA RFPPPGVRMK  300
QPFPTKPWES SPEMVKKLFQ VVRFVYTHFG SMDVHPFTFD EFAQAFHDKD SSLLGKVHVS  360
LLKLLMLNTE RGSGSVFVPR SSKDSRFLSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV  420
LVASGFGSDH HILNRNFFNK EKNQMVKYGL RPRTLKGELF ELLSKKGSGG LKVAELAKSP  480
QIIDLNLSGA SEVEQLIFST LSGDITLFEK IAPSAYRLRV DPRIKGKEDP RSDTEDSGTV  540
DDGGDASSSG DESDGPQESY PEHESRIVRW KQKNIHKNMN KCSEIDESYS GERWLLGLME  600
GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQSVLSN IQRAQSHASG GKIKKSTRTI  660
YQSSDEYLNR PGSSHSFDSS MQGQSGSLRG QDYIADSGAN ESPTRFAHQP QIVLLGSDRR  720
YNNYWLFLGP CRADDPGHRR VYFESSEDGH WEVIDSPQDL LSLLSVLDIR GTREAHLLAS  780
MKKRQSCLFE GMKKHLEDGC VVALTASSDS SRSETSSGNR YSPKPSSGDG ASPLSDIDSA  840
SVPTYLAGNL QNASSAIGIE VGRRSDEKMS KWERLQALDK WIWTSFYSSL TAVKCGKRSF  900
KESLVHCESC HDLYWRDERH CRICHSTFEV GFDLEERYAI HVATCREPED LYDVPNHKVL  960
PSQLQALKAA IHAIEARMPT AAFAGLWMKS SHNLWVKRLR RTSSLPELLQ VSIFFLFTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6327.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187489.1	0.0	homeobox-DDT domain protein RLT3-like
TrEMBL	F2ECV6	0.0	F2ECV6_HORVV; Predicted protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-114	Homeodomain-like transcriptional regulator