PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_63121.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 357aa MW: 40463.4 Da PI: 6.1068

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_63121.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.2	2.3e-51	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtd e+++ yL +kv +k++++ +v++evd++k+ePw+Lp+++ +ekewyfFs++d+ky+tg r+nra+++gyWkatgkdke+++ + MLOC_63121.1 15 LPPGFRFHPTDVEIITSYLVPKVLKKPFDT-RVVTEVDLNKHEPWELPNMAIMGEKEWYFFSEKDHKYPTGIRTNRAMTTGYWKATGKDKEIFQPsT 110 79**************************.99***********7666789***********************************866 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +l+g+kktLvfy g++pkgekt+W+mheyrl MLOC_63121.1 111 MSLIGMKKTLVFYMGTTPKGEKTNWIMHEYRL 142 778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-58	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	55.75	15	178	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEDYLQVQQQ QELHLPPGFR FHPTDVEIIT SYLVPKVLKK PFDTRVVTEV DLNKHEPWEL 60 PNMAIMGEKE WYFFSEKDHK YPTGIRTNRA MTTGYWKATG KDKEIFQPST MSLIGMKKTL 120 VFYMGTTPKG EKTNWIMHEY RLKSGKQPSP DVPSDITNAT IINTSSKEDY VVCRIFHKST 180 GLKKVVMSSY TMPMPMRVGA EHQHGFLESF TLPPLMDYNA SSSLTPPLSL PAASSYQLQA 240 TRPAALMMDD TLLPMMNGDY IGNHHHQMLV APPQPLIPFY HHHVEQQQHP MMQMQIMEME 300 MSADQGFMVG IEPGSEPSSI VSQEDVMIGL KNNDLGNGST ATPDEISSVN MGMDGMW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEDYLQVQQQ QELHLPPGFR FHPTDVEIIT SYLVPKVLKK PFDTRVVTEV DLNKHEPWEL  60
PNMAIMGEKE WYFFSEKDHK YPTGIRTNRA MTTGYWKATG KDKEIFQPST MSLIGMKKTL  120
VFYMGTTPKG EKTNWIMHEY RLKSGKQPSP DVPSDITNAT IINTSSKEDY VVCRIFHKST  180
GLKKVVMSSY TMPMPMRVGA EHQHGFLESF TLPPLMDYNA SSSLTPPLSL PAASSYQLQA  240
TRPAALMMDD TLLPMMNGDY IGNHHHQMLV APPQPLIPFY HHHVEQQQHP MMQMQIMEME  300
MSADQGFMVG IEPGSEPSSI VSQEDVMIGL KNNDLGNGST ATPDEISSVN MGMDGMW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	184	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	184	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	184	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	184	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	12	184	17	174	NAC domain-containing protein 19
3swm_B	2e-52	12	184	17	174	NAC domain-containing protein 19
3swm_C	2e-52	12	184	17	174	NAC domain-containing protein 19
3swm_D	2e-52	12	184	17	174	NAC domain-containing protein 19
3swp_A	2e-52	12	184	17	174	NAC domain-containing protein 19
3swp_B	2e-52	12	184	17	174	NAC domain-containing protein 19
3swp_C	2e-52	12	184	17	174	NAC domain-containing protein 19
3swp_D	2e-52	12	184	17	174	NAC domain-containing protein 19
4dul_A	2e-52	12	184	14	171	NAC domain-containing protein 19
4dul_B	2e-52	12	184	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_63121.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-132	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167840.1	1e-164	protein CUP-SHAPED COTYLEDON 2-like
Swissprot	Q9FLJ2	1e-70	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M0XUD8	0.0	M0XUD8_HORVV; Uncharacterized protein
STRING	MLOC_63121.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-72	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]