PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63058.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 498aa    MW: 53122.2 Da    PI: 8.6001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63058.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-0681103123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++Cgk F r  nL+ H r H
  MLOC_63058.1  81 YVCEICGKGFQRDQNLQLHRRGH 103
                   9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-880103No hitNo description
SMARTSM003550.006981103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-681103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.80181103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035540123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4146178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-8153178No hitNo description
SMARTSM00355210158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMLKDFAAIQ QQQQQQQLAL AAAAADENMS NLTSASGDQT SVSSHPLPPP SKKKRSLPGN  60
PDPDAEVIAL SPRALMATNR YVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRNPNEVVRK  120
KVYVCPEPGC VHHDRSRALG DLTGIKKHFS RKHGEKKWKC DKCAKRYAVQ SDWKAHSKVC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAVAVA VEEQQHPGML YSHGGGSAGY  240
QMPSVMDPSS SLGGGHGLIQ ELCLKREREQ QQQQQQQFAQ PWLSEQQQLE MAGEGAQTMF  300
GTTRMEQEFN ASSTPESSTQ PVGMSFASFP SSSAAGATAS SHMSATALLQ KAAQMGATLS  360
RPSCQGQMAA STFSSSSSSA AITNVTNNTP PAATSSSAAT STAVGVGFGH AFEAPAPYGV  420
DQRPSANRNA GNAAAAGGGR GNAGGANDGL TRDFLGLRAF SHGDILSMAG FDPCMPTSAS  480
ARAAYDQQGP QSSNPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34154220369Zinc finger protein JACKDAW
5b3h_F2e-34154220369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107120KLKQRNPNEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63058.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164353.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-121IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3B6GS950.0A0A3B6GS95_WHEAT; Uncharacterized protein
STRINGMLOC_63058.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.12e-98indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]