PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62877.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 411aa    MW: 44699.7 Da    PI: 7.5018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62877.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.3e-163983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+ l+++a +++G   W++I +++g ++t+ q++s+ qk+
     MLOC_62877.1 39 REKWTEEEHRLFLEAMQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 83
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.5643488IPR017930Myb domain
SuperFamilySSF466891.2E-153488IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-153786IPR006447Myb domain, plants
SMARTSM007174.2E-133886IPR001005SANT/Myb domain
PfamPF002494.7E-143982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-103979IPR009057Homeodomain-like
CDDcd001672.63E-104184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MARFQETKPD LSNSGSDTRM MGEARLPKAR KPYMITKQRE KWTEEEHRLF LEAMQLHGRA  60
WRRIQEHIGT KTAVQIRSHA QKFFSKVTRD SSGDSGGNSS SGAAGPPIQI PPPRPKRKSV  120
HPYPCNLRSA QPGKHAHALL RVDRPRLSMC EQGNGSPTSV VTTSRIALGS ESFDSDTSTI  180
DIEEPCPTPS TGTADVAVQA PPTDDDAKRS KDSGSNSEEV VCDNTSDAPV LKLFGKTVVV  240
NPGTCNLQTA SDMELDTSAE TPTSAPEAKT WSPWLANSQQ FMYYVPQGAV FFSYNNGSAP  300
YPMPSSPKAD QQHEQQASEA AAELRRREAS SNTASSSVAE TTARNSAESC TGAVGGDDEM  360
SHAAGLRKPV SPAFVQQRGF MPYKRCAAET RALLPQAPRE EADREMTRLC L
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550060.0AK355006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1014J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193476.10.0protein REVEILLE 7-like
TrEMBLM0XTJ30.0M0XTJ3_HORVV; Uncharacterized protein
STRINGMLOC_62877.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.14e-33MYB_related family protein