PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62844.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 277aa    MW: 30210.2 Da    PI: 4.4385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62844.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-1475119655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +Er RR+++N+++ +Lr+++P+      +K++Ka+i + A+eYI++Lq
  MLOC_62844.2  75 ILMERDRRRKLNEKLYTLRSVVPNI-----TKMDKASIIKDAIEYIQHLQ 119
                   579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.23469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1873133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-1473123No hitNo description
PfamPF000101.2E-1174119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1875134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.78E-5195261No hitNo description
PROSITE profilePS516718.941199275IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTLTGAAMP  60
GAGIGMGGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT KMDKASIIKD AIEYIQHLQA  120
EERQMEAEVS ALESATGADD DCDGGLSVEQ VSSAQRKKVK RALSVSSMND ALLAAAAVAS  180
PPVEVLELRV SEVSEKVLVV SVTCSKQRDA MTKVCRVLEE LRLRVITANI TSVSGCLMHT  240
LFVEVDEMDR FQMKETVEAA LSQLDSIGSP PLSSMSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62844.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509170.0AK250917.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98c12, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160196.11e-166transcription factor bHLH35-like
TrEMBLA0A287I9760.0A0A287I976_HORVV; Uncharacterized protein
TrEMBLA0A287I9B40.0A0A287I9B4_HORVV; Uncharacterized protein
STRINGMLOC_62844.11e-178(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-41bHLH family protein