PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62808.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 827aa    MW: 94537.1 Da    PI: 4.9078
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62808.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.5e-24105192291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+p
  MLOC_62808.2 105 LYCEYGHRMGFSVRKGKQYYFTGSKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELVP 192
                   7*****************************************9988..9999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-22105192IPR004330FAR1 DNA binding domain
PfamPF105514.6E-31303397IPR018289MULE transposase domain
PROSITE profilePS509669.371582620IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5586613IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-7595622IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MLPFVVDVAE MEGTNVPIEI DGDTICLENV GDDEHEAQES GQVQIIYATE NGAQVAFDSQ  60
EQETEEHSVR SEEDQENNSV IPSREEFTEE LRTKVAYSEE QAYRLYCEYG HRMGFSVRKG  120
KQYYFTGSKV IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDSEGQWRVI  180
QIIPEHNHEL VPPEEIHLLR SVRILSIPKP GTLNAMVNAE IQSMHGSLRA HDDGAECHSQ  240
VSIQSYALLE PEDAEALVGY LKRRTIEQGM FYWDVQVDQE GQMTNFFWRD GRSRVDYDCF  300
GDVVVFDTSY RTNKYNMICA PFVGINHHMQ NVMFGCAFML DESLTSYEWL LKSFLESMGG  360
CPPKTIFTDQ NETISKAIEV ILPETRHCLC QWHIEKNLQA HLDTPNGSGT FHSMFMKCMK  420
DCESEAEFEE TWAMMLHEHN LQDHQWLTDL FEQRHKWCTA LHKVAFDCGI RSLDMNFSSH  480
NVLGSIADES TSPTNFALEF DKLVGSWRTN ESVDDIQCNQ ISPESSVKQN SILQHAAEVY  540
THKVYKSLET EFLDGCSGTS YQEMQCSETL YRFEFIMQSG PKVCLVYLDT STMELSCSCK  600
KFEMMGILCL HALNALGLKN LDKIPESYVL KRWTKYVRKG TYVFPSDQSP EQDSTEAVLA  660
YRNRAMWFVY DLLMKSKGHQ DTRKLVLDVL ENGEKSLESV CELKRMHIHP SGKDKDASKA  720
EKRKKKLSKQ DKNSRNVKQA VLPPSAESVF VDQPNQNQYF ATEDIATNSS IGRPFFYQEY  780
PATGVSASQI EGHANMHSVP QCAPAPQEFP AYDAVHPPST FGGESNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62808.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584850.0AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179689.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A287QC380.0A0A287QC38_HORVV; Uncharacterized protein
STRINGMLOC_62808.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5