PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_62808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 827aa MW: 94537.1 Da PI: 4.9078 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.3 | 1.5e-24 | 105 | 192 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel+p MLOC_62808.1 105 LYCEYGHRMGFSVRKGKQYYFTGSKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELVP 192 7*****************************************9988..9999************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-22 | 105 | 192 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.6E-31 | 303 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 582 | 620 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.1E-5 | 586 | 613 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.9E-7 | 595 | 622 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MLPFVVDVAE MEGTNVPIEI DGDTICLENV GDDEHEAQES GQVQIIYATE NGAQVAFDSQ 60 EQETEEHSVR SEEDQENNSV IPSREEFTEE LRTKVAYSEE QAYRLYCEYG HRMGFSVRKG 120 KQYYFTGSKV IRTKDYYCSK EGLKDDEQLT EANFNKPETR TNCKAMVRFR VDSEGQWRVI 180 QIIPEHNHEL VPPEEIHLLR SVRILSIPKP GTLNAMVNAE IQSMHGSLRA HDDGAECHSQ 240 VSIQSYALLE PEDAEALVGY LKRRTIEQGM FYWDVQVDQE GQMTNFFWRD GRSRVDYDCF 300 GDVVVFDTSY RTNKYNMICA PFVGINHHMQ NVMFGCAFML DESLTSYEWL LKSFLESMGG 360 CPPKTIFTDQ NETISKAIEV ILPETRHCLC QWHIEKNLQA HLDTPNGSGT FHSMFMKCMK 420 DCESEAEFEE TWAMMLHEHN LQDHQWLTDL FEQRHKWCTA LHKVAFDCGI RSLDMNFSSH 480 NVLGSIADES TSPTNFALEF DKLVGSWRTN ESVDDIQCNQ ISPESSVKQN SILQHAAEVY 540 THKVYKSLET EFLDGCSGTS YQEMQCSETL YRFEFIMQSG PKVCLVYLDT STMELSCSCK 600 KFEMMGILCL HALNALGLKN LDKIPESYVL KRWTKYVRKG TYVFPSDQSP EQDSTEAVLA 660 YRNRAMWFVY DLLMKSKGHQ DTRKLVLDVL ENGEKSLESV CELKRMHIHP SGKDKDASKA 720 EKRKKKLSKQ DKNSRNVKQA VLPPSAESVF VDQPNQNQYF ATEDIATNSS IGRPFFYQEY 780 PATGVSASQI EGHANMHSVP QCAPAPQEFP AYDAVHPPST FGGESNF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_62808.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358485 | 0.0 | AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179689.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A287QC38 | 0.0 | A0A287QC38_HORVV; Uncharacterized protein | ||||
STRING | MLOC_62808.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-82 | FAR1-related sequence 5 |