PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62598.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 446aa    MW: 49824.1 Da    PI: 8.7483
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62598.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.4e-20354434186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +W+ +e++ Li++r em+e++++ k ++ lWee+s  + ++g++r+p qCk+ w +l ++y++ k+  ++      +t+pyf  ++
  MLOC_62598.1 354 KWKPEEIKSLIQLRGEMDEKFQSVKGRMVLWEEISGSLLKQGITRTPAQCKSVWTSLLQKYEESKKDGES-----MQTWPYFLAMD 434
                   7*************************************************************99998887.....479****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562817.87E-7279IPR001279Metallo-beta-lactamase
PfamPF075215.5E-72251IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.049347411IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-6349413IPR009057Homeodomain-like
SMARTSM007170.0012351413IPR001005SANT/Myb domain
PfamPF138372.7E-16353434No hitNo description
CDDcd122036.76E-22353418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKMLNRLTDL GPKIVMGKDA GLHTSGHAYH DELEEVLQIV KPQHFLPVHG ELLFLKEHEL  60
LGRSTGIRHT TVIKNGEMLG VSHLRNRKVL SNGFISLGKQ DFKLMYSDGD KAFGTSTDLC  120
IDERFRIASD GIIFVSMEIF RPEPASPESG LKGKFKITTR CLWLDNGRLL DALYKAAHAA  180
LSSCPLNCPL SHMERMVSEI LRKMVRKYSG KRPDVIVVAS ENTTVGFTEE VINKSSGKFG  240
PSAASRHMSL VDYEKTRPEN PEREAEESIP EVMRTPDDAT TSSNGESFLS SDLHQPKTLD  300
HFWESFKSPT AVKIARIVNA SAQGNKPKLG KISITDKDSS TSAPAPAKSS RKNKWKPEEI  360
KSLIQLRGEM DEKFQSVKGR MVLWEEISGS LLKQGITRTP AQCKSVWTSL LQKYEESKKD  420
GESMQTWPYF LAMDGFLSCE GEMATK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62598.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496120.0AK249612.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47b03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191368.10.0uncharacterized protein LOC109777127
SwissprotQ84W561e-159RNJ_ARATH; Ribonuclease J
TrEMBLA0A287U3710.0A0A287U371_HORVV; Uncharacterized protein
TrEMBLA0A287U3P20.0A0A287U3P2_HORVV; Uncharacterized protein
STRINGMLOC_62598.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.11e-157Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]