PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62589.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 364aa    MW: 40614.4 Da    PI: 9.4287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62589.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.16.8e-935434773374
          GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                   +s +  +a+++++ +sP++kfsh+taN+aIl+a++ge++vH+iD+di+qGlQWp L++ LasRp+ p slR+Tg+g+    s + le+tg+rLa+fA
  MLOC_62589.6  54 QSRRISSAFQAYNALSPLVKFSHFTANKAILQALDGEDHVHVIDLDIMQGLQWPGLFHMLASRPRRPLSLRVTGLGA----SLDVLEATGRRLADFA 146
                   566778999********************************************************************....9*************** PP

          GRAS 170 eelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                   ++lg+pfef+++  k  +  ++ +L    + +++Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ h s++Fl rf+eal+
  MLOC_62589.6 147 ASLGLPFEFQPIEGKIGHVADTTALlgprHHHHREATVVHWMH--HCLYDVTGSDVG----TVRLLKSLRPKLMTIVEQDLGH-SGDFLGRFVEALH 236
                   ***********8555555556666645444455*********9..889988999998....**********************.899********** PP

          GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                   yysalfd+l  ++++++eer+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+ll+ +++++gy++ ee+g+l 
  MLOC_62589.6 237 YYSALFDALRDSAGAAEEERHEVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPAAQARLLIGMYPWKGYTLAEEDGCLK 332
                   *********9999*****************************998887.9*********************************************** PP

          GRAS 360 lgWkdrpLvsvSaWr 374
                   lgWkd +L+++S+W+
  MLOC_62589.6 333 LGWKDLSLLTASSWE 347
                   **************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.9481327IPR005202Transcription factor GRAS
PfamPF035142.4E-9054347IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTRRRRAGSG CSCMALPPST SRVCWLWPRW RKGSGWWRRR RRAGCGYSPL AAAQSRRISS  60
AFQAYNALSP LVKFSHFTAN KAILQALDGE DHVHVIDLDI MQGLQWPGLF HMLASRPRRP  120
LSLRVTGLGA SLDVLEATGR RLADFAASLG LPFEFQPIEG KIGHVADTTA LLGPRHHHHR  180
EATVVHWMHH CLYDVTGSDV GTVRLLKSLR PKLMTIVEQD LGHSGDFLGR FVEALHYYSA  240
LFDALRDSAG AAEEERHEVE RQLLGAEIRN IVAVGGPKRT GEVRVERWGD ELRRAGFRPV  300
SLAGSPAAQA RLLIGMYPWK GYTLAEEDGC LKLGWKDLSL LTASSWEPTE DCYVAVAEQK  360
RHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1305534892380Protein SCARECROW
5b3h_A1e-1305534891379Protein SCARECROW
5b3h_D1e-1305534891379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62589.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-131SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A446M4C20.0A0A446M4C2_TRITD; Uncharacterized protein
STRINGMLOC_62589.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-128GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]