PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_62554.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

ERF

Protein Properties

Length: 262aa MW: 27565.6 Da PI: 5.6061

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62554.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	8.1e-17	76	124	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p+ + +r++lg++ tae+Aa+a++ a+++l+g MLOC_62554.2 76 FYRGIR-CR-NGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 124 79*9.66.7*****94....36***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.231	76	132	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-18	76	132	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-27	76	138	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-9	77	124	IPR001471	AP2/ERF domain
CDD	cd00018	2.49E-17	77	132	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-26	77	132	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAEKPCATSS SSAAADPLQV QVQAAAAGPA TELSPRNPTS PNSSPAHLGD TVGTTTALAA 60 TSSGEPSPRS TGKHPFYRGI RCRNGKWVSE IREPRKARRI WLGTYPTAEM AAAAYDVAAR 120 ALRGSDAVLN FPGAASSRPV PASTSPEDIR AAAAAAAAAA QLYRPHGEEA PDGTASIAAT 180 AEEQRHQGMM AREGAADGRT PYHHQMGNED FMDEEAIFEM PQMLRNMAAG MMMSPPRLSP 240 TASDEWPEPP GAGESLWSYH DP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-13	74	132	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62554.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098896	1e-94	FP098896.1 Phyllostachys edulis cDNA clone: bphylf043a21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159886.1	1e-132	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-42	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	M0XSB7	0.0	M0XSB7_HORVV; Uncharacterized protein
STRING	MLOC_62554.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	2e-37	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]