PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62535.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 457aa    MW: 50321 Da    PI: 6.541
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62535.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093694061954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   n+yps  ++  LA+++gL+ +qV++WF N R +
  MLOC_62535.1 369 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 406
                   665569******************************88 PP
2BELL77.71.7e-25231299472
          BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   el++ + +L  +leeVd+rY++y+eq++ +++ Fea+ag  +a  Yt++A ++iSrhFr+L+d i+ q+
  MLOC_62535.1 231 ELKRLRDRLYVMLEEVDRRYRRYCEQMRGLAGGFEAAAGERAASGYTAVAARTISRHFRSLRDGIVAQL 299
                   556667799*********************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-31162297IPR006563POX domain
PfamPF075263.0E-36168295IPR006563POX domain
PROSITE profilePS5007112.341347410IPR001356Homeobox domain
SMARTSM003895.9E-9350414IPR001356Homeobox domain
CDDcd000862.81E-12350411No hitNo description
SuperFamilySSF466896.42E-18351417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27353416IPR009057Homeodomain-like
PfamPF059205.0E-18367406IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAADAAA ASLMPQMDEG APELYGLQAG MELLGMRGLH AAAMPGATSA  60
AEDVHCDGGG DGHDGSTMRF FLEQQQQQQQ QHHQHHHPSQ APLSLSLCRP EEVAQLHQQH  120
HQHHHLGGSS QQQEQQQHEV AVATWMLPHD HDAATYAQAQ GHGAPWPLRS SRFLAPAQQL  180
LQGYCSLPVD TTPKRGKPQQ QDEAGGGGEV SSSSTSDWTP SPQIQAMDAL ELKRLRDRLY  240
VMLEEVDRRY RRYCEQMRGL AGGFEAAAGE RAASGYTAVA ARTISRHFRS LRDGIVAQLQ  300
AVRKALGEKD VSPPGMTRGD TPRLKVLDQC IRQQKAMHQN GGMMMDSHPW RPQRGLPERA  360
VTILRAWLFE HFLNPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYVEEM  420
KGEQQDDGGL NPNNPSSSGS HASDAQGQQG AAAADEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-14356414563Homeobox protein Meis2
4xrm_B1e-14356414563Homeobox protein Meis2
4xrs_A9e-15356413158Homeobox protein Meis1
4xrs_B9e-15356413158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678000.0AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16.
GenBankAK3721850.0AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184600.10.0homeobox protein BEL1 homolog
RefseqXP_020184605.10.0homeobox protein BEL1 homolog
RefseqXP_020184610.10.0homeobox protein BEL1 homolog
RefseqXP_020184619.10.0homeobox protein BEL1 homolog
SwissprotQ388972e-83BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLF2DV820.0F2DV82_HORVV; Predicted protein
STRINGMLOC_62535.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-79TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]