PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_62522.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GATA | ||||||||
Protein Properties | Length: 217aa MW: 23083.7 Da PI: 8.4699 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 112 | 146 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt +TplWR+gp+g+k+LCnaCG++++k+++ MLOC_62522.2 112 CANCGTASTPLWRNGPRGPKSLCNACGIRFKKEER 146 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.864 | 106 | 142 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.7E-18 | 106 | 156 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-13 | 108 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 110 | 146 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.05E-15 | 111 | 143 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 112 | 137 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.4E-18 | 112 | 146 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MATSTFSLFF PPLPSSKGQW PVAEEAAYSY DDHSTVTTLS PSSPASSASS GSLVDCTLSL 60 GMPSSRRPQP DRRPPPQAYP SVSAAAEPCY YHQQHGGRGG AAGHEQLLDR RCANCGTAST 120 PLWRNGPRGP KSLCNACGIR FKKEERRAAE TNGGGGCGYV AQRAPMSAPR AVPYAEEALP 180 YAGAVDAPFL AWRLNGVPPA PAFSAWPDRQ HGVYQYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_62522.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU722206 | 0.0 | GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154840.1 | 1e-133 | GATA transcription factor 19-like | ||||
Swissprot | Q6L5E5 | 1e-47 | GAT15_ORYSJ; GATA transcription factor 15 | ||||
TrEMBL | D4PAP2 | 1e-156 | D4PAP2_HORVV; Third outer glume | ||||
TrEMBL | I3V5T4 | 1e-156 | I3V5T4_HORVU; TRD1 | ||||
STRING | MLOC_62522.2 | 1e-157 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 3e-24 | GATA transcription factor 19 |
Publications ? help Back to Top | |||
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