PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62516.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 422aa    MW: 44705.4 Da    PI: 8.6824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62516.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17118165148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ lv +v+++G+g+W++++ + g+ R+ k+c++rw +yl
     MLOC_62516.1 118 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTRTGLMRCSKSCRLRWTNYL 165
                      79********************************************97 PP
2Myb_DNA-binding50.84e-16171216148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
     MLOC_62516.1 171 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 216
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-24109168IPR009057Homeodomain-like
PROSITE profilePS5129425.561113169IPR017930Myb domain
SuperFamilySSF466898.61E-30115212IPR009057Homeodomain-like
SMARTSM007172.9E-13117167IPR001005SANT/Myb domain
PfamPF002492.5E-16118165IPR001005SANT/Myb domain
CDDcd001671.98E-11120165No hitNo description
Gene3DG3DSA:1.10.10.604.0E-24169220IPR009057Homeodomain-like
SMARTSM007173.2E-16170218IPR001005SANT/Myb domain
PROSITE profilePS5129420.609170220IPR017930Myb domain
PfamPF002497.9E-15171216IPR001005SANT/Myb domain
CDDcd001679.05E-12173216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MHLHPYSCSG PCTEPPCPHL PPSLNPQHTA HTPHYHGLRL HLSLLLSPHS LCSVAVARVT  60
RSCSYTAPVA RPLVPVRPAP AAKGDLSPIP LGVAEAVASG RVESMGRPPC CDKEGVKKGP  120
WTPEEDLVLV SYVQEHGPGN WRAVPTRTGL MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK  180
LIVHLQALLG NRWAAIASYL PERTDNDIKN YWNTHLKRKL QAGGDAAAAK PAAQRPASSS  240
KGQWERRLQT DINMARRALR EALTTLDDIK PQQPDAADGV NGPAAAGADS GSPAASSSSA  300
ASLSHCSPSA AGPYVLTTAN ISRMLDGWTS TSKGRAAVAA ADSPSGSSAS EVSYGSGAAA  360
RALGSAFGYE RKPAVLAPDQ TQLNAIETWL FADDNSNNDH HGHAGGGLLG VPGMLPAMDY  420
PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-271182204105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-271182204105C-Myb DNA-Binding Domain
1msf_C3e-271182204105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62516.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573050.0AK357305.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1050C21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168716.10.0transcription factor MYB30-like
SwissprotQ9SN781e-95MYB94_ARATH; Transcription factor MYB94
TrEMBLF2D0980.0F2D098_HORVV; Predicted protein
STRINGMLOC_62516.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-86myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]