PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62500.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 268aa    MW: 29999.6 Da    PI: 8.7745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62500.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.9e-14181001297
                   HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3  12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   +   +++p +f+++h    ++ ++s++  +  ++g+ W v+l  +++++ ++ ++ W eF  a++L eg +++F+++ +++f   v+vf
  MLOC_62500.2  18 E--KMTIPDEFVQQHligAESCPSSQKALIIGPTGKLWPVEL--DQRQSDVLYGEVWAEFLTAHDLSEGSILLFRYEVNMSF--SVQVF 100
                   3..389**********9966777999****************..999999**************************998999..77765 PP
2B3491.1e-15177259286
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    k  ++s++lks ++ +  +f++++g+ +++  t++l+++ g   rsW v +++ ++  +++ +kGWk+F+++n+++egD ++Fk+++
  MLOC_62500.2 177 TK-QITSYSLKS-LFAVKLTFCSSIGLLEAC--TIQLKTSMGgsaRSWPVAFNIANTY-GFLTGKGWKRFCQDNEVEEGDRCTFKVVE 259
                   44.458899988.5999**********9888..799999988899*******655554.58999*********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-172105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8285103IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-175110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-136100No hitNo description
SMARTSM010191.2E-98103IPR003340B3 DNA binding domain
PfamPF023627.7E-1018100IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-16173267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-18173267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.969174268IPR003340B3 DNA binding domain
CDDcd100171.51E-9174256No hitNo description
SMARTSM010197.2E-7176268IPR003340B3 DNA binding domain
PfamPF023622.3E-12177259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSKTRPRFIK LLRPDDWEKM TIPDEFVQQH LIGAESCPSS QKALIIGPTG KLWPVELDQR  60
QSDVLYGEVW AEFLTAHDLS EGSILLFRYE VNMSFSVQVF LPNGCMKEYP YLADEADGSS  120
PLLPQSDKQL VAPSVSKRSY NKRQVVSGIP ATFPAMKAQK VQSQSKPAGV VGRHSFTKQI  180
TSYSLKSLFA VKLTFCSSIG LLEACTIQLK TSMGGSARSW PVAFNIANTY GFLTGKGWKR  240
FCQDNEVEEG DRCTFKVVEK MVWHVVIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62500.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194548.11e-168putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL79e-75Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A287XCA20.0A0A287XCA2_HORVV; Uncharacterized protein
TrEMBLM0XS130.0M0XS13_HORVV; Uncharacterized protein
STRINGMLOC_62500.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-13B3 family protein