PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_62335.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 407aa MW: 44285.9 Da PI: 9.1723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 1e-16 | 158 | 207 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++++ Lr+llP++ ++K +Ka+ L +++eYI+ Lq MLOC_62335.4 158 RSKHSATEQRRRTKINDRLDILRDLLPNC----DQKRDKASFLLEVIEYIRLLQ 207 889*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.80E-14 | 154 | 211 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-18 | 154 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-20 | 155 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.149 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-14 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 162 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MELFQGEEPA HDFLSLRAGG SPPFTRRQRP NQQAALKSLE PANGGGTAGG AGDGEASTAT 60 GLGQHVLPGG VGTFSIRQLP HARSMEEAGT GGDASVSASH GSRMEVAHEA RPGIMVRSAP 120 PTPTMWQDSS TDNKRSRGSR AEGRSSGSSA DQDPSSPRSK HSATEQRRRT KINDRLDILR 180 DLLPNCDQKR DKASFLLEVI EYIRLLQEKC QKYESGIPEQ NNVDANCMPW DKVYYRSRWR 240 NTQNISQVQG GGLSATTEDM NKEQYSSKGI AGAPAASLFS TQSVRETSAA PSSSQNIAEN 300 SMPSNQLPWL SMSTMNQNCD ASNRVLTKHD TQRPQDDSQS LSSAYSQGLL HKLKEALQKS 360 GVDPSQAKIS VEINMDRRTR ANAHIHDSSK ANKGKEPVQV TKRLRCD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_62335.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357599 | 0.0 | AK357599.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155686.1 | 0.0 | transcription factor BIM2-like isoform X1 | ||||
TrEMBL | M0XRD8 | 0.0 | M0XRD8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_62335.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-32 | BES1-interacting Myc-like protein 2 |