PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_62335.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 406aa MW: 44079.1 Da PI: 9.089 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 1e-16 | 166 | 215 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++++ Lr+llP++ ++K +Ka+ L +++eYI+ Lq MLOC_62335.3 166 RSKHSATEQRRRTKINDRLDILRDLLPNC----DQKRDKASFLLEVIEYIRLLQ 215 889*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.32E-14 | 162 | 219 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-18 | 162 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-20 | 163 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.149 | 164 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-14 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLASPLRPVI STFFLFSLQF SCLFASNTKC RSILVTTTAC TPALKSLEPA NGGGTAGGAG 60 DGEASTATGL GQHVLPGGVG TFSIRQLPHA RSMEEAGTGG DASVSASHGS RMEVAHEARP 120 GIMVRSAPPT PTMWQDSSTD NKRSRGSRAE GRSSGSSADQ DPSSPRSKHS ATEQRRRTKI 180 NDRLDILRDL LPNCDQKRDK ASFLLEVIEY IRLLQEKCQK YESGIPEQNN VDANCMPWDK 240 VYYRSRWRNT QNISQVQGGG LSATTEDMNK EQYSSKGIAG APAASLFSTQ SVRETSAAPS 300 SSQNIAENSM PSNQLPWLSM STMNQNCDAS NRVLTKHDTQ RPQDDSQSLS SAYSQGLLHK 360 LKEALQKSGV DPSQAKISVE INMDRRTRAN AHIHDSSKVT KRLRCD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_62335.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357599 | 0.0 | AK357599.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155690.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
TrEMBL | M0XRD3 | 0.0 | M0XRD3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_62335.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-32 | BES1-interacting Myc-like protein 2 |