PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62335.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 415aa    MW: 45031.2 Da    PI: 9.2629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62335.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16166215255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r +h++ E+rRR +iN++++ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  MLOC_62335.1 166 RSKHSATEQRRRTKINDRLDILRDLLPNC----DQKRDKASFLLEVIEYIRLLQ 215
                   889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-14162219No hitNo description
SuperFamilySSF474591.7E-18162226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-20163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLASPLRPVI STFFLFSLQF SCLFASNTKC RSILVTTTAC TPALKSLEPA NGGGTAGGAG  60
DGEASTATGL GQHVLPGGVG TFSIRQLPHA RSMEEAGTGG DASVSASHGS RMEVAHEARP  120
GIMVRSAPPT PTMWQDSSTD NKRSRGSRAE GRSSGSSADQ DPSSPRSKHS ATEQRRRTKI  180
NDRLDILRDL LPNCDQKRDK ASFLLEVIEY IRLLQEKCQK YESGIPEQNN VDANCMPWDK  240
VYYRSRWRNT QNISQVQGGG LSATTEDMNK EQYSSKGIAG APAASLFSTQ SVRETSAAPS  300
SSQNIAENSM PSNQLPWLSM STMNQNCDAS NRVLTKHDTQ RPQDDSQSLS SAYSQGLLHK  360
LKEALQKSGV DPSQAKISVE INMDRRTRAN AHIHDSSKAN KGKEPVQVTK RLRCD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575990.0AK357599.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155686.10.0transcription factor BIM2-like isoform X1
TrEMBLM0XRD30.0M0XRD3_HORVV; Uncharacterized protein
STRINGMLOC_62335.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-32BES1-interacting Myc-like protein 2