PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_62302.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 155aa MW: 16673.2 Da PI: 10.391

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62302.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.9	9e-08	53	95	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+aeN L++e+e+l+ + +l +e+ MLOC_62302.5 53 RSRKKMRLPEVKQLVLSLSAENAGLRQEMESLQRACTALSKEN 95 889************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.4E-5	53	91	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MCPSPAVAFF LCGIPCSLML LLLSFRWSLV GSAGGARRPS ILPVPQPRTA GQRSRKKMRL 60 PEVKQLVLSL SAENAGLRQE MESLQRACTA LSKENGALET RLEHSSSSSK RKRVGSEEGE 120 RRQCKPQQAG GGGGFVLPDL NFPAQDVADA REAAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	58	RSRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62302.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373881	0.0	AK373881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3046D15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196994.1	3e-61	uncharacterized protein LOC109782792
TrEMBL	M0XR67	1e-106	M0XR67_HORVV; Uncharacterized protein
STRING	MLOC_62302.5	1e-107	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51