PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62237.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 494aa    MW: 54486.5 Da    PI: 9.565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62237.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-15389479498
                   E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++ s+v     l lp +f++e+   ++ +++l+l +++g+ W+v++ ++ k++   l++GW +F  +n+L+  D++vF+l +  + + +v ++r
  MLOC_62237.1 389 IMKESYVYVGFFLNLPCEFVRECL--PRANRKLKLWNPQGKFWDVNYVFNSKRSVGALSGGWGKFSLDNNLEKFDVCVFELFS--KDNIKVYIYR 479
                   678899999999***********5..335568***************9999988899***********************875..4445777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-22377479IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-21379479IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-13386481IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492386481IPR003340B3 DNA binding domain
CDDcd100172.09E-22388479No hitNo description
PfamPF023621.3E-12389479IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKRVTEMDAD GSTSKKRSSI LENGMPEASA VACNVAPTSL NMDINAADPP EAVVVPLEEG  60
NRTTRKRVRE TDANDSALRK FLRVRETHAN DSALQKSSRV REIKLESGKG DMDINAADPS  120
QVSAAPLEES NEATVKRVTE MDANGSTSKK RSSILENGMS EASAVTCKVA PTSLKMDLNA  180
ADPPEAVVVP LEEGNRTTRE RVRETDANDS ALRKSLRVRE TDANDSALHK SSRVREIDAN  240
DSALQKSLRV REIDANDSAL QKSLWVRDID ANGSVLQKSS IALDKDKKRC PAASVGTYKS  300
ASTSLDSTED SDSSSSMLEQ SISCIKSELT SPIRLGVSKD AARRGNNSAT GKRQLKVISQ  360
RPRITEIQKD NTLLRAKQFK SKNPFGLQIM KESYVYVGFF LNLPCEFVRE CLPRANRKLK  420
LWNPQGKFWD VNYVFNSKRS VGALSGGWGK FSLDNNLEKF DVCVFELFSK DNIKVYIYRV  480
VPEITPFLPG PGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659260.0AK365926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166536.10.0B3 domain-containing protein Os11g0197600-like
TrEMBLF2DPV80.0F2DPV8_HORVV; Predicted protein
STRINGMLOC_62237.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-12B3 family protein