PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_62068.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 66aa MW: 7376.12 Da PI: 10.2977 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.7 | 2.2e-07 | 44 | 65 | 4 | 25 |
XCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk MLOC_62068.2 44 QKTMRRLAQNREAARKSRLRKK 65 57889****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-4 | 37 | 65 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 48 | 63 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MAEASPRTET SDDTDENLML EPGNAALAVA SDSSDRSRDR NGDQKTMRRL AQNREAARKS 60 RLRKKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_62068.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251460 | 1e-105 | AK251460.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf125e16, mRNA sequence. | |||
GenBank | AK357239 | 1e-105 | AK357239.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048N17. | |||
GenBank | AK359391 | 1e-105 | AK359391.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N07. | |||
GenBank | AK362949 | 1e-105 | AK362949.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011J05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164500.1 | 5e-34 | transcription factor HBP-1b(c38) isoform X1 | ||||
Refseq | XP_020164501.1 | 5e-34 | transcription factor HBP-1b(c38) isoform X1 | ||||
Swissprot | P23923 | 4e-35 | HBP1B_WHEAT; Transcription factor HBP-1b(c38) | ||||
TrEMBL | F2DGD2 | 4e-36 | F2DGD2_HORVV; Predicted protein | ||||
STRING | EMT21326 | 2e-34 | (Aegilops tauschii) | ||||
STRING | TRIUR3_28255-P1 | 6e-35 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06960.2 | 8e-14 | OCS-element binding factor 5 |
Publications ? help Back to Top | |||
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