PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6206.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 307aa    MW: 35536.2 Da    PI: 5.0727
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6206.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.22.3e-32121022101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+ ik
   MLOC_6206.3  12 FLTKTFDLVADPATDGVVSWGRGGNSFVVWDPHLFAAVLLPRFFKHSNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQRQLLKMIK 99 
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
   MLOC_6206.3 100 RRR 102
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.39E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-598101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVGLHETGPP PFLTKTFDLV ADPATDGVVS WGRGGNSFVV WDPHLFAAVL LPRFFKHSNF  60
SSFVRQLNTY GFRKIDPDRW EFANEGFIRG QRQLLKMIKR RRPLSYLPSS QQQALGSCLE  120
VGQFGFDDEI EVLKRDKNAL LSEVVKLRQE QQSTRADMRA MEERLHRAEQ KQLQMMGFLA  180
RAIQNPDFFL QLVQQQDKLK DLEDPYPTKR RRSINVMPFL GPEGTSQSEQ LESTFIFEDR  240
EFSELENLAM NIQGIRKGME DDKGGRSQGC GEAELTDDFW EELLSEGMRD EAEMLELERR  300
RSRYVDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25210116129Heat shock factor protein 1
5d5v_B2e-25210116129Heat shock factor protein 1
5d5v_D2e-25210116129Heat shock factor protein 1
5hdg_A2e-25101018110Heat shock factor protein 1
5hdn_A2e-25101018110Heat shock factor protein 1
5hdn_B2e-25101018110Heat shock factor protein 1
5hdn_C2e-25101018110Heat shock factor protein 1
5hdn_D2e-25101018110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6206.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7741080.0KJ774108.1 Triticum aestivum genotype SB169 heat shock factor A6 (HsfA6f) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178141.10.0heat stress transcription factor A-2d-like
SwissprotQ8H7Y61e-166HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A287PMR30.0A0A287PMR3_HORVV; Uncharacterized protein
STRINGMLOC_6206.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-88heat shock transcription factor A2