PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_61880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 290aa MW: 33571.5 Da PI: 7.3884 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81 | 1.3e-25 | 219 | 271 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ R MLOC_61880.2 219 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQVRR 271 79*******************.*****************************866 PP | |||||||
2 | Response_reg | 80.4 | 5.8e-27 | 32 | 140 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l++ +y +v+++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge + +l+ + Ga MLOC_61880.2 32 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVLKGITHGAC 126 799********************.***************99999********************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ MLOC_61880.2 127 DYLLKPVRIEELRN 140 ************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.6E-145 | 6 | 278 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.57E-35 | 29 | 154 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.7E-42 | 29 | 163 | No hit | No description |
SMART | SM00448 | 5.6E-31 | 30 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.858 | 31 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-23 | 32 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.64E-26 | 33 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 216 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.158 | 216 | 275 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 217 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 219 | 271 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-5 | 221 | 268 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MLLDAMMMEA RKGLMERERE RERDQFPVGM RVLAVDDDPV CLKVLEVLLR RCQYHVTTTN 60 QAATALRLLR ENKDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVLKG 120 ITHGACDYLL KPVRIEELRN VWQHVVRRKF SNREPNNHDL CKEISKPPSS DSYYRLGQAT 180 CDSHRSSDQS GRPNKKRKEL HSEDEDEGDD NDDASASKKP RVVWSVELHR KFVAAVNQLG 240 IDKAVPKRIL ELMNVEKLTR ENVASHLQVR RHGIYFHRHL SLFECYLFHS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-21 | 215 | 268 | 1 | 54 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_61880.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK369966 | 0.0 | AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190045.1 | 1e-170 | two-component response regulator ORR22-like | ||||
Swissprot | B8B3I4 | 1e-146 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
Swissprot | Q5SML5 | 1e-146 | ORR22_ORYSJ; Two-component response regulator ORR22 | ||||
TrEMBL | A0A446Y460 | 1e-180 | A0A446Y460_TRITD; Uncharacterized protein | ||||
STRING | MLOC_61880.1 | 1e-176 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-104 | response regulator 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|