PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61880.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 661aa    MW: 72255.7 Da    PI: 6.4013
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61880.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28219272155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  MLOC_61880.1 219 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 272
                   79*******************.********************************8 PP
2Response_reg78.32.6e-26321401109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + +l+ +  Ga 
  MLOC_61880.1  32 VLAVDDDPVCLKVLEVLLRRCQY-HVTTTNQAATALRLLRENKdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVLKGITHGAC 126
                   799********************.***************99999********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
  MLOC_61880.1 127 DYLLKPVRIEELRN 140
                   ************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1806661IPR017053Response regulator B-type, plant
SuperFamilySSF521728.25E-3529154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-4129162No hitNo description
SMARTSM004485.6E-3130142IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.85831146IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2332140IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.41E-2633145No hitNo description
Gene3DG3DSA:1.10.10.602.4E-30216277IPR009057Homeodomain-like
PROSITE profilePS5129411.055216275IPR017930Myb domain
SuperFamilySSF466891.63E-19217276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25219272IPR006447Myb domain, plants
PfamPF002491.2E-6221271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLLDAMMMEA RKGLMERERE RERDQFPVGM RVLAVDDDPV CLKVLEVLLR RCQYHVTTTN  60
QAATALRLLR ENKDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVLKG  120
ITHGACDYLL KPVRIEELRN VWQHVVRRKF SNREPNNHDL CKEISKPPSS DSYYRLGQAT  180
CDSHRSSDQS GRPNKKRKEL HSEDEDEGDD NDDASASKKP RVVWSVELHR KFVAAVNQLG  240
IDKAVPKRIL ELMNVEKLTR ENVASHLQKY RLYLRRLSAV ASQQASIAAA FGGRDPFLHM  300
GAFEGLHSYH QPFAPSASLP SFNPHGLLSG ASAAAFGIQD LASPKASQCS SSNGAGSHCA  360
GDTNKFHIVS LQDNQQADLS QGLTASSLVQ PQLQQNWIHQ ETNDLCSVFS GGALVNTMSG  420
TLQRVTGSSL PPEDLLECTQ HIKVGAHPPI GMPTASSGLL GRSVGVSANL RDSGISQQGA  480
LPVSDGFSVD KLPLHIRFDG AGVTKLDGYV AQEQVMDQKG IFSERMTVSV CPSESLIAAS  540
SAKCGASSSG STMLLPPHDA ERHSRYLQFG VASNPRHRMD GMRQDQRLNN GGFSYDGGVI  600
VPEQAHMYDL EVPKLQGQGG FNSSGCNFDG LLNSIIKVEN DEVPFAENDL GCELFPLGAC  660
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24215278164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699660.0AK369966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2102E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190045.10.0two-component response regulator ORR22-like
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A287VWZ70.0A0A287VWZ7_HORVV; Two-component response regulator
STRINGMLOC_61880.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]