PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_61870.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 207aa MW: 23537.3 Da PI: 6.5206 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 9.9e-08 | 144 | 177 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + MLOC_61870.3 144 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 177 469*****************************87 PP | |||||||
2 | ELK | 27.5 | 6.9e-10 | 98 | 119 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L+++Y+++L+++++E++ MLOC_61870.3 98 ELKSELKQGYKEKLVDIREEIM 119 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 6.2E-14 | 1 | 42 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.9E-12 | 1 | 41 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.1E-6 | 98 | 119 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 98 | 118 | IPR005539 | ELK domain |
SMART | SM01188 | 8.3E-4 | 98 | 119 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.515 | 118 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-10 | 120 | 185 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 120 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.98E-11 | 121 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 125 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 138 | 177 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MTHYVLLLCS FKEQLQQHVR VHAMEAVMGC WELEQSLQSL TGASPGEGTG ATMSDDEDNQ 60 VDSETNMFDG NDGSDGMGFG PLILTEGERS LIERVRHELK SELKQGYKEK LVDIREEIMR 120 KRRAGKLPGD TAATLKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH 180 SSNTASSSEK TKKKRNVTGN DGAEQSW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 194 | RKRNWHSSNTASSSEKTKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_61870.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195853.1 | 1e-153 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-145 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A287TPY3 | 1e-153 | A0A287TPY3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_61870.3 | 1e-154 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-120 | KNOTTED1-like homeobox gene 3 |