PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_61696.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 125aa MW: 14155 Da PI: 6.9505 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.6 | 8.8e-17 | 31 | 67 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedCkN MLOC_61696.2 31 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 67 589*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 18.033 | 1 | 69 | IPR005172 | CRC domain |
SMART | SM01114 | 3.3E-15 | 29 | 70 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.9E-12 | 32 | 66 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
NYLWLVIIVS ILCLCHLQED AHNSSSSTPP RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR 60 CEDCKNPFGK NEGIMADESK RFLYTGADLD HSEDEHDFIV ERSPRLQSPI SKESSFQHTP 120 PRSKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_61696.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367866 | 1e-180 | AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24. | |||
GenBank | AK374557 | 1e-180 | AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157750.1 | 5e-71 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A446J7K8 | 2e-83 | A0A446J7K8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_F16BCEC90.2 | 3e-82 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 9e-21 | Tesmin/TSO1-like CXC domain-containing protein |