PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_61530.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 423aa MW: 46934.9 Da PI: 6.6583 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.1 | 5e-10 | 124 | 164 | 4 | 41 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k+ rr+++NReAAr+sR+RKka+i++Le k ++Le+e MLOC_61530.3 124 EKVLRRLAQNREAARKSRLRKKAYIQQLESsriKLAQLEQE 164 6899************************9722244444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-7 | 118 | 169 | No hit | No description |
SMART | SM00338 | 0.0018 | 121 | 174 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.14 | 123 | 167 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.7E-7 | 124 | 162 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 9.99E-21 | 125 | 171 | No hit | No description |
SuperFamily | SSF57959 | 3.31E-7 | 125 | 168 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.7E-26 | 224 | 301 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MELYPGYLED HFNIHKLSGT GGASPPEYMT SAQYAPAPLR MGMYERAQPP QQHQQQQQQH 60 QLQPVLGMWS SEPYKVDSGG QATSGSSIME PDAKFDHAGL DEDPQMDELE TAGDADQEAS 120 KPREKVLRRL AQNREAARKS RLRKKAYIQQ LESSRIKLAQ LEQELQRARQ QQGVYGGSNP 180 GTSLQRHHGG SAGLGFAAAG QMMDPGVAAF EIKYGHWVDE QKRHTEQLRS ALQQGQGTSE 240 LELQMMVETG LANYDDLFRI KGAAAQSDVF CVMSGLWRSP AERFFLWIGG FRPSEVLKIL 300 SPQLHPMTEA QSVAVYGLQL TSAQAEDALS QGMQKLQQTL AESLTDPFAA PDAYMVGAVE 360 KLKGLVGFVQ QADHLRLETL QNMHRILTTR QAAKGLLVLG DYFQRLRALS TLWAARPRES 420 AIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_61530.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364746 | 0.0 | AK364746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028B19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166032.1 | 0.0 | transcription factor TGAL6-like isoform X1 | ||||
Refseq | XP_020166033.1 | 0.0 | transcription factor TGAL6-like isoform X1 | ||||
Swissprot | A0A0P0WFC8 | 1e-176 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | F2DLH8 | 0.0 | F2DLH8_HORVV; Predicted protein | ||||
STRING | MLOC_61530.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-108 | TGACG motif-binding factor 4 |