PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61530.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 423aa    MW: 46934.9 Da    PI: 6.6583
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61530.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10124164441
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                    k+ rr+++NReAAr+sR+RKka+i++Le    k ++Le+e
  MLOC_61530.2 124 EKVLRRLAQNREAARKSRLRKKAYIQQLESsriKLAQLEQE 164
                   6899************************9722244444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-7118169No hitNo description
SMARTSM003380.0018121174IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.14123167IPR004827Basic-leucine zipper domain
PfamPF001704.7E-7124162IPR004827Basic-leucine zipper domain
CDDcd147089.99E-21125171No hitNo description
SuperFamilySSF579593.31E-7125168No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
PfamPF141441.7E-26224301IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MELYPGYLED HFNIHKLSGT GGASPPEYMT SAQYAPAPLR MGMYERAQPP QQHQQQQQQH  60
QLQPVLGMWS SEPYKVDSGG QATSGSSIME PDAKFDHAGL DEDPQMDELE TAGDADQEAS  120
KPREKVLRRL AQNREAARKS RLRKKAYIQQ LESSRIKLAQ LEQELQRARQ QQGVYGGSNP  180
GTSLQRHHGG SAGLGFAAAG QMMDPGVAAF EIKYGHWVDE QKRHTEQLRS ALQQGQGTSE  240
LELQMMVETG LANYDDLFRI KGAAAQSDVF CVMSGLWRSP AERFFLWIGG FRPSEVLKIL  300
SPQLHPMTEA QSVAVYGLQL TSAQAEDALS QGMQKLQQTL AESLTDPFAA PDAYMVGAVE  360
KLKGLVGFVQ QADHLRLETL QNMHRILTTR QAAKGLLVLG DYFQRLRALS TLWAARPRES  420
AIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3647460.0AK364746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028B19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166032.10.0transcription factor TGAL6-like isoform X1
RefseqXP_020166033.10.0transcription factor TGAL6-like isoform X1
SwissprotA0A0P0WFC81e-176TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLF2DLH80.0F2DLH8_HORVV; Predicted protein
STRINGMLOC_61530.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-108TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]