PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_61530.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 395aa MW: 43829.5 Da PI: 7.0907

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_61530.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.6e-10	96	136	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k+ rr+++NReAAr+sR+RKka+i++Le k ++Le+e MLOC_61530.1 96 EKVLRRLAQNREAARKSRLRKKAYIQQLESsriKLAQLEQE 136 6899************************9722244444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-7	90	141	No hit	No description
SMART	SM00338	0.0018	93	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	95	139	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-7	96	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.0E-7	97	140	No hit	No description
PROSITE pattern	PS00036	0	100	115	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-26	196	273	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MTSAQYAPAP LRMGMYERAQ PPQQHQQQQQ QHQLQPVLGM WSSEPYKVDS GGQATSGSSI 60 MEPDAKFDHA GLDEDPQMDE LETAGDADQE ASKPREKVLR RLAQNREAAR KSRLRKKAYI 120 QQLESSRIKL AQLEQELQRA RQQQGVYGGS NPGTSLQRHH GGSAGLGFAA AGQMMDPGVA 180 AFEIKYGHWV DEQKRHTEQL RSALQQGQGT SELELQMMVE TGLANYDDLF RIKGAAAQSD 240 VFCVMSGLWR SPAERFFLWI GGFRPSEVLK ILSPQLHPMT EAQSVAVYGL QLTSAQAEDA 300 LSQGMQKLQQ TLAESLTDPF AAPDAYMVGA VEKLKGLVGF VQQADHLRLE TLQNMHRILT 360 TRQAAKGLLV LGDYFQRLRA LSTLWAARPR ESAIS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MTSAQYAPAP LRMGMYERAQ PPQQHQQQQQ QHQLQPVLGM WSSEPYKVDS GGQATSGSSI  60
MEPDAKFDHA GLDEDPQMDE LETAGDADQE ASKPREKVLR RLAQNREAAR KSRLRKKAYI  120
QQLESSRIKL AQLEQELQRA RQQQGVYGGS NPGTSLQRHH GGSAGLGFAA AGQMMDPGVA  180
AFEIKYGHWV DEQKRHTEQL RSALQQGQGT SELELQMMVE TGLANYDDLF RIKGAAAQSD  240
VFCVMSGLWR SPAERFFLWI GGFRPSEVLK ILSPQLHPMT EAQSVAVYGL QLTSAQAEDA  300
LSQGMQKLQQ TLAESLTDPF AAPDAYMVGA VEKLKGLVGF VQQADHLRLE TLQNMHRILT  360
TRQAAKGLLV LGDYFQRLRA LSTLWAARPR ESAIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_61530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364746	0.0	AK364746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028B19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166035.1	0.0	transcription factor TGAL6-like isoform X2
Swissprot	A0A0P0WFC8	1e-157	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	F2DLH8	0.0	F2DLH8_HORVV; Predicted protein
STRING	MLOC_61530.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-109	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]