PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60958.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 582aa    MW: 61167.4 Da    PI: 8.8667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60958.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0586108123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k F r  nL+ H r H
  MLOC_60958.1  86 FVCEVCNKGFQREQNLQLHRRGH 108
                   89*******************88 PP
2zf-C2H212.30.00053163185123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k++  +s+ k H + +
  MLOC_60958.1 163 WKCEKCSKRYAVQSDWKAHSKIC 185
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-785108No hitNo description
Gene3DG3DSA:3.30.160.608.0E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.8E-586108IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09486108IPR007087Zinc finger, C2H2
SMARTSM003550.004186108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-7158183No hitNo description
SMARTSM00355130163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIREGH QQEQMKPLLA QQQRQHVIAP PSALLTTGPD QAAAEAPPVK  60
KKRTMPDPDA EVIALSPKTL MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKDPN  120
QVQRRRVYLC PEPTCVHHEP GRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA  180
HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPPGAGHLYG ATGAANMALS  240
LSQVGSSLHD AHGQYHQASP DLLRFGGGGG GGMAARLDHL LSSSNAPSFR HLPPPQAPAF  300
HLGTAQEFVD GNGQHAFLQG KPFHGLMQLP DLQGNGSGGT SSSPPGLFNL GYIANSANSS  360
GTSSHGHASQ GHMANDQISE GAGGGGGGGA GSENSGAGFF SAGGNFSGGD HQVAPSGMYN  420
EQSVMMPQMS ATALLQKAAQ MGSSTSTDGG AASVFGGFMG SSVPQGRAPM LDQGQMHLQS  480
LMNSLAGGGN GGGMYGGANG RGMIDPRLYD MDQHEVKFSQ QGRGGVGAGG DVTRDFLGVG  540
GRGEMMRGMS VARGENHSGS DMSFLEAEMK SASSAFNGGR MQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35159221365Zinc finger protein JACKDAW
5b3h_F4e-35159221365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591320.0AK359132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179604.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLF2D5H20.0F2D5H2_HORVV; Predicted protein
STRINGMLOC_60958.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-105indeterminate(ID)-domain 4