PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60907.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 231aa MW: 23864.8 Da PI: 9.8931 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.1e-39 | 61 | 122 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss MLOC_60907.2 61 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 122 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 54 | 109 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-33 | 63 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEEMIMAGNP NPNPNGNPSP QPAPPSGAEA QRAPLPGQPA AGAGAAAGTG STERKAARPQ 60 KEKAINCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS 120 SSSVVSSAAG AVSTSGAASG TVPVGGMPAK NPKLMHEGAH DLNLAFPHHH GRVLHPSEFA 180 AFPSLESSSV CNPGGAMAAN GVGGGRGMGT FSAMELLRST GCYVPLPQVQ L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60907.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363473 | 0.0 | AK363473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015M18. | |||
GenBank | AK364865 | 0.0 | AK364865.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028O15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164856.1 | 1e-100 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_020164857.1 | 1e-100 | dof zinc finger protein DOF1.8-like isoform X2 | ||||
Refseq | XP_020164858.1 | 1e-100 | dof zinc finger protein DOF1.8-like isoform X2 | ||||
Refseq | XP_020164859.1 | 1e-100 | dof zinc finger protein DOF1.8-like isoform X2 | ||||
Swissprot | B9F1L8 | 1e-81 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A287UGC0 | 1e-166 | A0A287UGC0_HORVV; Predicted protein | ||||
TrEMBL | F2DLU7 | 1e-166 | F2DLU7_HORVV; Predicted protein | ||||
STRING | MLOC_60907.1 | 1e-166 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-31 | Dof family protein |
Publications ? help Back to Top | |||
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