PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_60907.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 317aa MW: 33340.6 Da PI: 10.0774

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_60907.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	147	208	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss MLOC_60907.1 147 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 208 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	140	195	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MTYGGERRGS NPTTVIHKTF LPLPLFRVLE TTSSSCSSPS FPRPSFSPPV HSAAGEDFRR 60 RAREAIGIDP WMDAAQWHQG LGLVKPMEEM IMAGNPNPNP NGNPSPQPAP PSGAEAQRAP 120 LPGQPAAGAG AAAGTGSTER KAARPQKEKA INCPRCNSTN TKFCYYNNYS LQQPRYFCKT 180 CRRYWTEGGS LRNVPVGGGS RKNKRSSSSV VSSAAGAVST SGAASGTVPV GGMPAKNPKL 240 MHEGAHDLNL AFPHHHGRVL HPSEFAAFPS LESSSVCNPG GAMAANGVGG GRGMGTFSAM 300 ELLRSTGCYV PLPQVQL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_60907.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363473	0.0	AK363473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015M18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164856.1	1e-111	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	B9F1L8	7e-92	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	F2DHV5	0.0	F2DHV5_HORVV; Predicted protein
STRING	MLOC_60907.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-30	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]